get_allele_probs: Get the haplotype probs nearest to the given chr and...

In dmgatti/qtl2med: Mediation Analysis for qtl2

Description

Get the haplotype probs nearest to the given chr and position.

Usage

get_allele_probs(chr, pos, genoprobs, map)

Arguments

chr	character indicating the chromosome to use. This must match one of the names of genoprobs and map.
pos	numeric value in Mb indicating the position on the chromosome.
genoprobs	qtl2-style list of genoprobs containing 3-dimensional arrays of allele probs, one for each chromosome. Samples in rows, 8 founders in columns, markers in slices.
map	qtl2-style list containing numeric vectors of marker positions in Mb.

Value

n x 8 numeric matrix.

Examples

ap = get_allele_probs(chr = "1", pos = 5.0, genoprobs = genoprobs, map = map)

dmgatti/qtl2med documentation built on May 8, 2019, 11:55 p.m.