qtl2med-package: Mediation Analysis for qtl2

Description Details Author(s) References See Also Examples

Description

Given a quantitative trait locus (qtl), the data that produced the qtl peak and gene expression data for the same set of subjects, ask whether the expression of any of the genes explains a significant part of the variance. We do this by regressing the phenotype on covariates and the genotype at the QTL peak and comparing this to a model that adds the expression of one gene. When we do this across the genome, we often find several genes that reduce the LOD score. These genes are candidate mediators that may be influencing the phenotype.

Details

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~~ An overview of how to use the package, including the most important ~~ ~~ functions ~~

Author(s)

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Maintainer: NA

References

~~ Literature or other references for background information ~~

See Also

~~ Optional links to other man pages, e.g. ~~ ~~ <pkg> ~~

Examples

1
~~ simple examples of the most important functions ~~

dmgatti/qtl2med documentation built on May 8, 2019, 11:55 p.m.