dmphillippo/multinma
Bayesian Network Meta-Analysis of Individual and Aggregate Data

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Bayesian Network Meta-Analysis of Individual and Aggregate Data

.Rbuildignore
.github/.gitignore
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.github/workflows/R-CMD-check.yaml
.github/workflows/commit-commands.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/rhub.yaml
.gitignore
CITATION.cff
DESCRIPTION
NAMESPACE
NEWS.md R/adapt_delta.R R/data.R R/default.R R/doc-examples.R R/geom_km.R R/integration.R R/marginal_effects.R R/mcmc_array-class.R R/mspline.R R/multinma-package.R R/nma.R R/nma_data-class.R R/nma_data.R R/nma_dic-class.R R/nma_dic.R R/nma_nodesplit-class.R R/nma_prior-class.R R/nma_summary-class.R R/nodesplit_summary-class.R R/predict.R R/priors.R R/ranks.R R/relative_effects.R R/s3_register.R R/stan_nma-class.R R/stanmodels.R R/theme_multinma.R R/zzz.R README.Rmd README.md
_pkgdown.yml
configure
configure.win
cran-comments.md data-raw/atrial_fibrillation.R data-raw/bcg_vaccine/bcg_vaccine.R
data-raw/bcg_vaccine/bcg_vaccine.txt
data-raw/blocker/blocker.R
data-raw/blocker/blocker.txt
data-raw/diabetes/diabetes.R
data-raw/diabetes/diabetes.txt
data-raw/dietary_fat/dietary_fat.R
data-raw/dietary_fat/dietary_fat.txt
data-raw/hta_psoriasis.R
data-raw/ndmm/covariate_summaries.csv
data-raw/ndmm/genf_pars.csv
data-raw/ndmm/maxt_pcens.csv
data-raw/ndmm/ndmm.R data-raw/parkinsons/parkinsons.R
data-raw/parkinsons/parkinsons.txt
data-raw/plaque_psoriasis/all_agd.csv
data-raw/plaque_psoriasis/dummy_ipd.csv
data-raw/plaque_psoriasis/plaque_psoriasis.R
data-raw/psoriasis/psoriasis.txt
data-raw/smoking/smoking.R
data-raw/smoking/smoking.txt
data-raw/social_anxiety/social_anxiety.R
data-raw/social_anxiety/social_anxiety.txt
data-raw/social_anxiety/social_anxiety_classes.txt
data-raw/social_anxiety/social_anxiety_treatments.txt
data-raw/statins/statins.R
data-raw/statins/statins.txt
data-raw/thrombolytics/thrombolytics.R
data-raw/thrombolytics/thrombolytics.txt
data-raw/transfusion.R
data/atrial_fibrillation.rda
data/bcg_vaccine.rda
data/blocker.rda
data/diabetes.rda
data/dietary_fat.rda
data/hta_psoriasis.rda
data/ndmm_agd.rda
data/ndmm_agd_covs.rda
data/ndmm_ipd.rda
data/parkinsons.rda
data/plaque_psoriasis_agd.rda
data/plaque_psoriasis_ipd.rda
data/smoking.rda
data/social_anxiety.rda
data/statins.rda
data/thrombolytics.rda
data/transfusion.rda
inst/CITATION
inst/REFERENCES.bib
inst/include/stan_meta_header.hpp
inst/stan/binomial_1par.stan
inst/stan/binomial_2par.stan
inst/stan/include/count_nonzero.stan
inst/stan/include/data_common.stan
inst/stan/include/generated_quantities_common.stan
inst/stan/include/generated_quantities_theta.stan
inst/stan/include/generated_quantities_theta_fitted.stan
inst/stan/include/license.stan
inst/stan/include/model_common.stan
inst/stan/include/parameters_common.stan
inst/stan/include/prior_select.stan
inst/stan/include/transformed_data_common.stan
inst/stan/include/transformed_parameters_common.stan
inst/stan/include/transformed_parameters_theta.stan
inst/stan/include/vector_functions.stan
inst/stan/normal.stan
inst/stan/ordered_multinomial.stan
inst/stan/poisson.stan
inst/stan/predict_delta_new.stan
inst/stan/survival_mspline.stan
inst/stan/survival_param.stan
man-roxygen/args-data_Surv.R man-roxygen/args-data_common.R man-roxygen/args-data_rE.R man-roxygen/args-data_se.R man-roxygen/args-data_y.R man-roxygen/args-details_mutate.R man-roxygen/args-details_sample_size.R man-roxygen/args-details_trt_ref.R man-roxygen/ex_ndmm.R man-roxygen/ex_ndmm_example.R man-roxygen/ex_ndmm_network.R man-roxygen/ex_plaque_psoriasis_integration.R man-roxygen/ex_plaque_psoriasis_mlnmr.R man-roxygen/ex_plaque_psoriasis_mlnmr_example.R man-roxygen/ex_plaque_psoriasis_network.R man-roxygen/ex_smoking_network.R man-roxygen/ex_smoking_nma_fe.R man-roxygen/ex_smoking_nma_fe_example.R man-roxygen/ex_smoking_nma_re.R man-roxygen/ex_smoking_nma_re_example.R man-roxygen/ex_smoking_nma_re_nodesplit.R man-roxygen/ex_smoking_nma_re_nodesplit_example.R man-roxygen/ex_smoking_nma_re_ume.R man-roxygen/ex_smoking_nma_re_ume_example.R man-roxygen/seealso_nma_data.R man/Bernoulli.Rd man/GammaDist.Rd man/aa_example_ndmm.Rd man/aa_example_pso_mlnmr.Rd man/aa_example_smk_fe.Rd man/aa_example_smk_nodesplit.Rd man/aa_example_smk_re.Rd man/aa_example_smk_ume.Rd man/adapt_delta.Rd man/add_integration.Rd man/as.array.stan_nma.Rd man/as.stanfit.Rd man/atrial_fibrillation.Rd man/bcg_vaccine.Rd man/blocker.Rd man/combine_network.Rd man/default_values.Rd man/diabetes.Rd man/dic.Rd man/dietary_fat.Rd man/distr.Rd
man/figures/logo.svg
man/generalised_t.Rd man/geom_km.Rd man/get_nodesplits.Rd man/graph_conversion.Rd man/hta_psoriasis.Rd man/is_network_connected.Rd man/log_t.Rd man/logitNormal.Rd man/loo.Rd man/make_knots.Rd man/marginal_effects.Rd man/mcmc_array-class.Rd man/mspline.Rd man/multi.Rd man/multinma-package.Rd man/ndmm.Rd man/nma.Rd man/nma_data-class.Rd man/nma_dic-class.Rd man/nma_dic-methods.Rd man/nma_nodesplit-class.Rd man/nma_prior-class.Rd man/nma_summary-class.Rd man/nma_summary-methods.Rd man/nodesplit_summary-class.Rd man/nodesplit_summary-methods.Rd man/pairs.stan_nma.Rd man/parkinsons.Rd man/plaque_psoriasis.Rd man/plot.nma_data.Rd man/plot.nma_dic.Rd man/plot.nma_summary.Rd man/plot.nodesplit_summary.Rd man/plot_integration_error.Rd man/plot_prior_posterior.Rd man/posterior_ranks.Rd man/predict.stan_nma.Rd man/print.nma_data.Rd man/print.nma_nodesplit_df.Rd man/print.stan_nma.Rd man/priors.Rd man/random_effects.Rd man/reexports.Rd man/relative_effects.Rd man/set_agd_arm.Rd man/set_agd_contrast.Rd man/set_agd_surv.Rd man/set_ipd.Rd man/smoking.Rd man/social_anxiety.Rd man/softmax.Rd man/stan_nma-class.Rd man/statins.Rd man/summary.nma_nodesplit_df.Rd man/summary.nma_prior.Rd man/summary.stan_nma.Rd man/theme_multinma.Rd man/thrombolytics.Rd man/transfusion.Rd
multinma.Rproj
pkgdown/extra.css
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/Makevars
src/Makevars.win
tests/testthat.R
tests/testthat/_snaps/plot_nma_data/atrial-fibrillation-network-star.svg
tests/testthat/_snaps/plot_nma_data/atrial-fibrillation-network.svg
tests/testthat/_snaps/plot_nma_data/bcg-vaccine-network.svg
tests/testthat/_snaps/plot_nma_data/blocker-network.svg
tests/testthat/_snaps/plot_nma_data/diabetes-network.svg
tests/testthat/_snaps/plot_nma_data/dietary-fat-network.svg
tests/testthat/_snaps/plot_nma_data/duplicated-agd-arms-network.svg
tests/testthat/_snaps/plot_nma_data/duplicated-agd-contrasts-network.svg
tests/testthat/_snaps/plot_nma_data/duplicated-ipd-arms-network.svg
tests/testthat/_snaps/plot_nma_data/hta-psoriasis-network.svg
tests/testthat/_snaps/plot_nma_data/ndmm-network.svg
tests/testthat/_snaps/plot_nma_data/parkinsons-arm-network.svg
tests/testthat/_snaps/plot_nma_data/parkinsons-contrast-network.svg
tests/testthat/_snaps/plot_nma_data/parkinsons-mixed-network.svg
tests/testthat/_snaps/plot_nma_data/plaque-psoriasis-network.svg
tests/testthat/_snaps/plot_nma_data/smoking-network.svg
tests/testthat/_snaps/plot_nma_data/statins-network.svg
tests/testthat/_snaps/plot_nma_data/thrombolytics-dias-network.svg
tests/testthat/_snaps/plot_nma_data/thrombolytics-network.svg
tests/testthat/_snaps/plot_nma_data/transfusion-network.svg
tests/testthat/helper.R tests/testthat/test-add_integration.R tests/testthat/test-breaks_integer.R tests/testthat/test-class_effects.R tests/testthat/test-data_combine.R tests/testthat/test-data_set.R tests/testthat/test-example_atrial_fibrillation.R tests/testthat/test-example_bcg_vaccine.R tests/testthat/test-example_blocker.R tests/testthat/test-example_diabetes.R tests/testthat/test-example_dietary_fat.R tests/testthat/test-example_hta_psoriasis.R tests/testthat/test-example_parkinsons.R tests/testthat/test-example_plaque_psoriasis.R tests/testthat/test-example_smoking.R tests/testthat/test-example_social_anxiety.R tests/testthat/test-example_statins.R tests/testthat/test-example_thrombolytics.R tests/testthat/test-example_transfusion.R tests/testthat/test-logitnorm.R tests/testthat/test-marginal_effects.R tests/testthat/test-multi.R tests/testthat/test-nma.R tests/testthat/test-nodesplit.R tests/testthat/test-plot_integration_error.R tests/testthat/test-plot_nma_data.R tests/testthat/test-posterior_ranks.R tests/testthat/test-predict.R tests/testthat/test-priors.R tests/testthat/test-relative_effects.R
vignettes/.gitignore
vignettes/children/knitr_setup.R
vignettes/class_effects_flow_chart-1.svg
vignettes/example_atrial_fibrillation.Rmd
vignettes/example_atrial_fibrillation.html
vignettes/example_atrial_fibrillation.html.asis
vignettes/example_bcg_vaccine.Rmd
vignettes/example_bcg_vaccine.html
vignettes/example_bcg_vaccine.html.asis
vignettes/example_blocker.Rmd
vignettes/example_blocker.html
vignettes/example_blocker.html.asis
vignettes/example_diabetes.Rmd
vignettes/example_diabetes.html
vignettes/example_diabetes.html.asis
vignettes/example_dietary_fat.Rmd
vignettes/example_dietary_fat.html
vignettes/example_dietary_fat.html.asis
vignettes/example_hta_psoriasis.Rmd
vignettes/example_hta_psoriasis.html
vignettes/example_hta_psoriasis.html.asis
vignettes/example_ndmm.Rmd
vignettes/example_ndmm.Rmd.orig
vignettes/example_ndmm.html
vignettes/example_ndmm.html.asis
vignettes/example_parkinsons.Rmd
vignettes/example_parkinsons.html
vignettes/example_parkinsons.html.asis
vignettes/example_plaque_psoriasis.Rmd
vignettes/example_plaque_psoriasis.html
vignettes/example_plaque_psoriasis.html.asis
vignettes/example_smoking.Rmd
vignettes/example_smoking.html
vignettes/example_smoking.html.asis
vignettes/example_social_anxiety.Rmd
vignettes/example_social_anxiety.html
vignettes/example_social_anxiety.html.asis
vignettes/example_statins.Rmd
vignettes/example_statins.html
vignettes/example_statins.html.asis
vignettes/example_thrombolytics.Rmd
vignettes/example_thrombolytics.html
vignettes/example_thrombolytics.html.asis
vignettes/example_transfusion.Rmd
vignettes/example_transfusion.html
vignettes/example_transfusion.html.asis
vignettes/figure/ndmm-baseline-hazards-1.png
vignettes/figure/ndmm-km-data-1.png
vignettes/figure/ndmm-loghr-1.png
vignettes/figure/ndmm-marginal-hazards-1.png
vignettes/figure/ndmm-marginal-hr-1.png
vignettes/figure/ndmm-median-survival-1.png
vignettes/figure/ndmm-network-1.png
vignettes/figure/ndmm-survival-1.png
vignettes/precompile.R
vignettes/pso-full-dev-dev-1.png
vignettes/pso-full-pred-1.png
vignettes/pso-full-pred-new-1.png
vignettes/pso-full-relaxing-SEM-1.png
vignettes/pso-full-releff-1.png
vignettes/pso-full-releff-new-1.png
vignettes/vignette_overview.Rmd
dmphillippo/multinma documentation built on April 12, 2025, 11:41 a.m.

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