gene_set_rank_test: Perform a rank-based single sample gene set analysis.

In dolchan/ssgsrt: Single sample gene set rank test

Description

This function performs a rank-based single sample gene set analysis for a set of samples (data) and a list of gene sets (geneset_list).

Usage

gene_set_rank_test(data, geneset_list, row_names = NULL,
  alternative = "two.sided", test.method = "ks")

Arguments

data	Either a set of samples in data.frame format or a sample in a named array format.
geneset_list	a named list of gene sets, each of list element is named and a list ofgenes.
alternative	see 'a_sample_gene_set_rank_test' for detail.
test.method	c('ks.test', 'wilcox.test'). Defaults to 'ks'.

Examples

gene_set_rank_test(data, a_geneset_list)

dolchan/ssgsrt documentation built on May 15, 2019, 9:44 a.m.