parse_a_line_in_gmt: Parse a line in 'gmt' format
In dolchan/ssgsrt: Single sample gene set rank test
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function parses a line of string in 'gmt' format,
for example a line in a MSigDB file.
Usage
1
parse_a_line_in_gmt(aLine)
Arguments
aLine
a string in 'gmt' format. There are assumed three main elements.
Each element is 'tab' delitmeted. The first item is a name, the second
item is 'url' or something like that, and the last item is a list of genes,
separated by 'space'.
Value
a list of three elements: name, url, geneset
Author(s)
Seungchan Kim (dolchan@gmail.com)
Examples
1
parse_a_line_in_gmt('a_name\tan_url\tgene1 gene2 gene3')
dolchan/ssgsrt documentation built on May 15, 2019, 9:44 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
This function parses a line of string in 'gmt' format, for example a line in a MSigDB file.
Usage
1 | parse_a_line_in_gmt(aLine)
|
Arguments
aLine |
a string in 'gmt' format. There are assumed three main elements. Each element is 'tab' delitmeted. The first item is a name, the second item is 'url' or something like that, and the last item is a list of genes, separated by 'space'. |
Value
a list of three elements: name, url, geneset
Author(s)
Seungchan Kim (dolchan@gmail.com)
Examples
1 | parse_a_line_in_gmt('a_name\tan_url\tgene1 gene2 gene3')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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