ssgsrt: Single sample gene set rank test

Description Usage Arguments Value Examples

This function reads a GMT file and creates a list of gene sets.

1	read_MSigDB(gmtfile, min.size = 0, max.size = -1, simplify = TRUE)

`gmtfile`	a text file in 'gmt' format. See 'parse_a_line_in_gmt' function for detail.
`min.size`	The minimum gene set size to read. Defaults to 0.
`max.size`	The maximum gene set size to read. Defaults to no limit.
`simplify`	Defaults to TRUE. See 'output' for detail.

a list of gene set. If TRUE, the return structure is simplified to a list of genesets each of which is a list of genes and the name of each geneset is the name of gene set from MSigDB file, the first element of each line. If FALSE, it returns a list of three element list each element of which is name, url, and geneset.