| admissible_doses | Find doses which would not be 'too big' an increase |
| binom_2_bern | Turn a short DLT data frame with n_dlt/n into a longer... |
| choose_prior | Find prior parameters for an increasing logistic curve |
| combine_doses | Choose dose combinations to be investigated, and plot the... |
| combine_doses_trim | Choose dose combinations to be investigated, and plot the... |
| combo_truth | Produce a vector of "true" p(DLT) at each dose combination |
| compare_all | Graphical comparison of a model-based design versus a... |
| compare_overall_n | Plot the sample sizes of a series of simulated trials. |
| compare_over_target | Plot the number of patients treated above the 'target'... |
| compare_prop_dlts | Plot the proportion of DLTs in a series of simulated trials. |
| compare_true_tox | Plot the true toxicity probabilities at the selected doses |
| comparison_sim | Simulate model-based and rule-based trials, and compare... |
| create_combo_prior | Create a prior for combination dose response model from 2... |
| create_mono_prior | Create a prior for monotherapy dose response, similar to... |
| dose_grid | Create matrix of all possible dose combinations |
| dose_row | Find the row number of a dose combination of interest. |
| doses | Combine original and log doses in a single object |
| find_starting_dose | Find the id number of the recommended starting dose |
| first_steps | Plot what posterior would look like after first cohort. |
| get_info | Find quantiles of p(DLT) and probabilites of toxicity |
| get_next_dose | Get the next dose |
| get_prior_info | Find quantiles of p(DLT) and probabilites of toxicity |
| get_samples | Use JAGS to get simulations from posterior |
| next_steps | Plot what posterior would look like after first cohort. |
| plot_combo_dose_id | Display the id number of each dose combination. |
| plot_contour | Plot contours of p(overdose) and p(target toxicity). |
| plot_info | Plot the prior/posterior distribution for p(DLT) at all dose... |
| plot_route_through_doses | Display the id number of each dose combination with route... |
| plot_selected | Plot how often each dose combination is selected |
| plot_trial | Plot the results of a simulated trial |
| plot_truth | Plot the 'true' p(DLT) at all dose combinations |
| sim_study | Simulate multiple studies and collect results |
| sim_trial | Simulate a combination dose finding trial. |
| sum_sims | Summarize results from simulation |
