parse_gse_soft: parse GSE SOFT file (contains platform annotation)

In dongzhuoer/rGEO: read GEO (Gene Expression Omnibus) raw data

Description

parse GSE SOFT file (contains platform annotation)

Usage

parse_gse_soft(soft_file, verbose = T)

Arguments

path	string. path to the SOFT file

Details

for now, we drop probes which haven't been mapped to a symbool (mapping to multiple symbols is okay).

Value

list

1. accession: string. platform accession

2. info: tibble. chip column name information

3. table: tibble. chip annotation

See Also

Other read raw data: read_gse_matrix(), read_gse_soft()

Examples

parse_gse_soft(system.file('extdata/GSE19161_family.soft.gz', package = 'rGEO'), verbose = F)

parse_gse_soft(system.file('extdata/GSE51280_family.soft.gz', package = 'rGEO'))

dongzhuoer/rGEO documentation built on July 28, 2020, 7:23 a.m.