read_gse_soft: read GSE SOFT file (contains platform annotation)
In dongzhuoer/rGEO: read GEO (Gene Expression Omnibus) raw data
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
read GSE SOFT file (contains platform annotation)
Usage
1
read_gse_soft(soft_file, verbose = F)
Arguments
path
string. path to the SOFT file
Details
for now, we drop probes which haven't been mapped to a symbool (mapping multiple symbols is okay)
Value
tibble or NULL. the first variable is ID_REF (probe ID) and the second one is HUGO gene symbol
See Also
Other read raw data:
parse_gse_soft(),
read_gse_matrix()
Examples
1
2
3
read_gse_soft(system.file('extdata/GSE19161_family.soft.gz', package = 'rGEO'))
read_gse_soft(system.file('extdata/GSE51280_family.soft.gz', package = 'rGEO'), verbose = T)
dongzhuoer/rGEO documentation built on July 28, 2020, 7:23 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value See Also Examples
Description
read GSE SOFT file (contains platform annotation)
Usage
1 | read_gse_soft(soft_file, verbose = F)
|
Arguments
path |
string. path to the SOFT file |
Details
for now, we drop probes which haven't been mapped to a symbool (mapping multiple symbols is okay)
Value
tibble or NULL. the first variable is ID_REF (probe ID) and the second one is HUGO gene symbol
See Also
Other read raw data:
parse_gse_soft(),
read_gse_matrix()
Examples
1 2 3 | read_gse_soft(system.file('extdata/GSE19161_family.soft.gz', package = 'rGEO'))
read_gse_soft(system.file('extdata/GSE51280_family.soft.gz', package = 'rGEO'), verbose = T)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.