read_gse_matrix: read GSE series matrix file (contains expression data)
In dongzhuoer/rGEO: read GEO (Gene Expression Omnibus) raw data
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
read GSE series matrix file (contains expression data)
Usage
1
read_gse_matrix(matrix_file)
Arguments
path
string. path to the matrix file
Details
For now, we assume that the only special value in input file is ” (empty, you may search \\t\\t), i.e., no Inf, NaN, NA, etc. And we don't collect sample meta data.
Value
tibble or NULL. the first variable is ID_REF (probe ID), others are gene expression value of each sample
See Also
Other read raw data:
parse_gse_soft(),
read_gse_soft()
Examples
1
read_gse_matrix(system.file('extdata/GSE51280_series_matrix.txt.gz', package = 'rGEO'))
dongzhuoer/rGEO documentation built on July 28, 2020, 7:23 a.m.
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Description Usage Arguments Details Value See Also Examples
Description
read GSE series matrix file (contains expression data)
Usage
1 | read_gse_matrix(matrix_file)
|
Arguments
path |
string. path to the matrix file |
Details
For now, we assume that the only special value in input file is ” (empty, you may search \\t\\t), i.e., no Inf, NaN, NA, etc. And we don't collect sample meta data.
Value
tibble or NULL. the first variable is ID_REF (probe ID), others are gene expression value of each sample
See Also
Other read raw data:
parse_gse_soft(),
read_gse_soft()
Examples
1 | read_gse_matrix(system.file('extdata/GSE51280_series_matrix.txt.gz', package = 'rGEO'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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