R/datasets.R

In dosreislab/simplephy: A simple package for Bayesian phylogenetic analysis

#' Pariwise alignment of 12S rRNA gene of human and orangutan
#'
#' @description Pairwise alignment of the 12S rRNA gene of the mitochondrial
#'   genomes of human and orangutan. The alignment is compressed into site
#'   patterns, suitable for analysis under the JC69 and K80 models of nucleotide
#'   substitution. See Table 1.3 in Yang (2014).
#'
#' @format \code{humanorang} is a list with elements \code{n}, the number of
#'   sites in the alignment; \code{ns}, the number of transitional differences
#'   between the two species; \code{nv}, the number of transversional
#'   differences; and \code{x} the total number of differences (\code{x = ns +
#'   nv}).
#'
#' @source Yang Z (2014) \emph{Molecular evolution: A Statistical approach},
#'   Oxford University Press.
#'
"humanorang"