vignettes/default_jules_parameter_perturbations.R
In dougmcneall/julesR: What the Package Does (One Line, Title Case)
# Default parameter perturbations for JULES
# 0.5 and 2 times
b_wl_io = list(
'standard' = rep(1.667, 13),
'min' = rep((0.6*1.667), 13), # make sure b_wl > 1
'max' = rep((2*1.667), 13),
'namelist' = 'jules_pftparm'
)
# 0.5 and 2 times
sigl_io = list(
'standard' = c(0.0375, 0.0375, 0.0375, 0.1, 0.1, 0.025, 0.025, 0.025, 0.05, 0.05, 0.05, 0.05, 0.05),
'min' = 0.5 * c(0.0375, 0.0375, 0.0375, 0.1, 0.1, 0.025, 0.025, 0.025, 0.05, 0.05, 0.05, 0.05, 0.05),
'max' = 2 * c(0.0375, 0.0375, 0.0375, 0.1, 0.1, 0.025, 0.025, 0.025, 0.05, 0.05, 0.05, 0.05, 0.05),
'namelist' = 'jules_pftparm'
)
# 0.5 and custom
lai_max_io = list(
'standard' = c(7,9,7,5,7,3,3,3,3,3,3,4,4),
'min' = 0.5 * c(7,9,7,5,7,3,3,3,3,3,3,4,4),
'max' = c(10,10,10,10,10,6,6,6,6,6,6,7,7),
'namelist' = 'jules_triffid'
)
# 1/3 and 3 times
lai_min_io = list(
'standard' = c(1,1,1,1,1,0.6,0.6,0.6,0.6,0.6,0.6,1,1),
'min' = 0.33 * c(1,1,1,1,1,0.6,0.6,0.6,0.6,0.6,0.6,1,1),
'max' = 3 * c(1,1,1,1,1,0.6,0.6,0.6,0.6,0.6,0.6,1,1),
'namelist' = 'jules_triffid'
)
# fix the zeros to -1,1 so that we get some variation in range
tlow_io = list(
'standard' = c(10,13,13,-10,0,10,10,10,13,13,13,10,0),
'min' = 0.9 * c(10,13,13,-10,-1,10,10,10,13,13,13,10,-1),
'max' = 1.1 * c(10,13,13,-10,1,10,10,10,13,13,13,10,1),
'namelist' = 'jules_pftparm'
)
# 0.5 and 2 times
g_area_io = list(
'standard' = c(0.011,0.007,0.014,0.01,0.025,0.125,0.125,0.125,0.06,0.06,0.06,0.06,0.1),
'min' = 0.5 * c(0.011,0.007,0.014,0.01,0.025,0.125,0.125,0.125,0.06,0.06,0.06,0.06,0.1),
'max' = 2 * c(0.011,0.007,0.014,0.01,0.025,0.125,0.125,0.125,0.06,0.06,0.06,0.06,0.1),
'namelist' = 'jules_triffid'
)
# 0.5 and 2 times
dqcrit_io = list(
'standard' = c(0.09,0.09,0.09,0.041,0.06,0.051,0.051,0.051,0.075,0.075,0.075,0.03,0.044),
'min' = 0.5 * c(0.09,0.09,0.09,0.041,0.06,0.051,0.051,0.051,0.075,0.075,0.075,0.03,0.044) ,
'max' = 2 * c(0.09,0.09,0.09,0.041,0.06,0.051,0.051,0.051,0.075,0.075,0.075,0.03,0.044),
'namelist' = 'jules_pftparm'
)
# 0.5 and 2 times
r_grow_io = list(
'standard' = rep(0.25,13),
'min' = 0.5 * rep(0.25,13),
'max' = 2 * rep(0.25,13) ,
'namelist' = 'jules_pftparm'
)
nmass_io = list(
'standard' = c(0.021 ,0.017, 0.0144, 0.0186, 0.0115, 0.024, 0.024, 0.024, 0.0113, 0.0113, 0.0113, 0.0218, 0.0136),
'min' = 0.5 * c(0.021 ,0.017, 0.0144, 0.0186, 0.0115, 0.024, 0.024, 0.024, 0.0113, 0.0113, 0.0113, 0.0218, 0.0136),
'max' = 2 * c(0.021 ,0.017, 0.0144, 0.0186, 0.0115, 0.024, 0.024, 0.024, 0.0113, 0.0113, 0.0113, 0.0218, 0.0136),
'namelist' = 'jules_pftparm'
)
lma_io = list(
'standard' = c(0.0823,0.1039, 0.1403,0.1006, 0.2263,0.0495, 0.0495, 0.0495, 0.137, 0.137, 0.137, 0.0709, 0.1515),
'min' = 0.5 * c(0.0823,0.1039, 0.1403,0.1006, 0.2263,0.0495, 0.0495, 0.0495, 0.137, 0.137, 0.137, 0.0709, 0.1515),
'max' = 2 * c(0.0823,0.1039, 0.1403,0.1006, 0.2263,0.0495, 0.0495, 0.0495, 0.137, 0.137, 0.137, 0.0709, 0.1515),
'namelist' = 'jules_pftparm'
)
nr_io = list(
'standard' = c(0.01726, 0.01726, 0.01726, 0.00784, 0.00784, 0.0162, 0.0162, 0.0162, 0.0084, 0.0084, 0.0084, 0.01726, 0.0172) ,
'min' = 0.5 * c(0.01726, 0.01726, 0.01726, 0.00784, 0.00784, 0.0162, 0.0162, 0.0162, 0.0084, 0.0084, 0.0084, 0.01726, 0.0172),
'max' = 2 * c(0.01726, 0.01726, 0.01726, 0.00784, 0.00784, 0.0162, 0.0162, 0.0162, 0.0084, 0.0084, 0.0084, 0.01726, 0.0172),
'namelist' = 'jules_pftparm'
)
tleaf_of_io = list(
'standard' = c(280, 278.15, 233.15, 278.15,233.15, 278.15, 278.15, 278.15, 278.15, 278.15, 278.15, 280, 233.15) ,
'min' = 0.9 * c(280, 278.15, 233.15, 278.15,233.15, 278.15, 278.15, 278.15, 278.15, 278.15, 278.15, 280, 233.15),
'max' = 1.1 * c(280, 278.15, 233.15, 278.15,233.15, 278.15, 278.15, 278.15, 278.15, 278.15, 278.15, 280, 233.15),
'namelist' = 'jules_pftparm'
)
dcatch_dlai_io = list(
'standard' = rep(0.05, 13) ,
'min' = 0.5 * rep(0.05, 13) ,
'max' = 2 * rep(0.05, 13) ,
'namelist' = 'jules_pftparm'
)
alpha_io = list(
'standard' = c(0.064, 0.064, 0.048, 0.08, 0.064, 0.048, 0.048, 0.048, 0.04, 0.04, 0.04, 0.064, 0.048),
'min' = 0.5 * c(0.064, 0.064, 0.048, 0.08, 0.064, 0.048, 0.048, 0.048, 0.04, 0.04, 0.04, 0.064, 0.048),
'max' = 2 * c(0.064, 0.064, 0.048, 0.08, 0.064, 0.048, 0.048, 0.048, 0.04, 0.04, 0.04, 0.064, 0.048),
'namelist' = 'jules_pftparm'
)
# These parameters taken from GA7
dz0v_dh_io_frac = c(0, 0.16) / 0.05
dz0v_dh_io = list(
'standard' = c(0.05, 0.05, 0.05, 0.05, 0.05, 0.1 , 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1),
'min' = rep(0, 13),
'max' = dz0v_dh_io_frac[2] * c(0.05, 0.05, 0.05, 0.05, 0.05, 0.1 , 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1),
'namelist' = 'jules_pftparm'
)
f0_io_frac = c(0.65, 0.972) / 0.875
f0_io = list(
'standard' = c(0.875, 0.875, 0.892, 0.875, 0.875, 0.931, 0.931, 0.931, 0.8, 0.8, 0.8, 0.875, 0.875),
'min' = f0_io_frac[1] * c(0.875, 0.875, 0.892, 0.875, 0.875, 0.931, 0.931, 0.931, 0.8, 0.8, 0.8, 0.875, 0.875),
'max' = f0_io_frac[2] * c(0.875, 0.875, 0.892, 0.875, 0.875, 0.931, 0.931, 0.931, 0.8, 0.8, 0.8, 0.875, 0.875),
'namelist' = 'jules_pftparm'
)
rootd_ft_io_frac = c(0, 8) /3
rootd_ft_io = list(
'standard' = c(2, 3, 2, 2, 1.8, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5),
'min' = rep(0, 13),
'max' = rootd_ft_io_frac[2] * c(2, 3, 2, 2, 1.8, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5),
'namelist' = 'jules_pftparm'
)
tupp_io_frac = c(25,41) / 36
tupp_io = list(
'standard' = c(43, 43, 43, 26, 32, 32, 32, 32, 45, 45, 45, 40, 36),
'min' = tupp_io_frac[1] * c(43, 43, 43, 26, 32, 32, 32, 32, 45, 45, 45, 40, 36),
'max' = tupp_io_frac[2] * c(43, 43, 43, 26, 32, 32, 32, 32, 45, 45, 45, 40, 36),
'namelist' = 'jules_pftparm'
)
# Andy Wiltshire's JULES Parameter choices
# Doug McNeall dougmcneall@gmail.com
hw_sw_io = list(
'standard' = rep(0.5, 13),
'min' = rep(0, 13),
'max' = rep(1,13),
'namelist' = 'jules_pftparm'
)
knl_io = list(
'standard' = rep(0.2, 13),
'min' = rep(0.1, 13),
'max' = rep(0.5,13),
'namelist' = 'jules_pftparm'
)
a_wl_io = list(
'standard' = c(0.78, 0.845, 0.78, 0.8, 0.65, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.13, 0.13),
'min' = 0.5 * c(0.78, 0.845, 0.78, 0.8, 0.65, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.13, 0.13),
'max' = 2* c(0.78, 0.845, 0.78, 0.8, 0.65, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.13, 0.13),
'namelist' = 'jules_pftparm'
)
fd_io = list(
'standard' = c(0.01, 0.01, 0.01, 0.015, 0.015, 0.019, 0.019, 0.019, 0.019, 0.019, 0.019, 0.015, 0.015),
'min' = 0.5 * c(0.01, 0.01, 0.01, 0.015, 0.015, 0.019, 0.019, 0.019, 0.019, 0.019, 0.019, 0.015, 0.015),
'max' = 2 * c(0.01, 0.01, 0.01, 0.015, 0.015, 0.019, 0.019, 0.019, 0.019, 0.019, 0.019, 0.015, 0.015),
'namelist' = 'jules_pftparm'
)
g_root_io = list(
'standard' = c(0.15, 0.25, 0.25, 0.15, 0.15, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.15, 0.15),
'min' = rep(0, 13),
'max' = rep(0.5, 13),
'namelist' = 'jules_triffid'
)
g_wood_io = list(
'standard' = c(0.01, 0.01, 0.01, 0.01, 0.01, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.05, 0.05),
'min' = rep(0,13),
'max' = c(0.05, 0.05, 0.05, 0.05, 0.05, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.1, 0.1),
'namelist' = 'jules_triffid'
)
retran_l_io = list(
'standard' = c(0.5, 0.5, 0.5, 0.77, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5),
'min' = rep(0,13),
'max' = rep(1,13),
'namelist' = 'jules_triffid'
)
retran_r_io = list(
'standard' = rep(0.2,13),
'min' = rep(0,13),
'max' = rep(1,13),
'namelist' = 'jules_triffid'
)
kaps_roth = list(
'standard' = c(2.15E-07, 6.43E-09, 1.41E-08, 4.29E-10),
'min' = 0.5 * c(2.15E-07, 6.43E-09, 1.41E-08, 4.29E-10),
'max' = 2 * c(2.15E-07, 6.43E-09, 1.41E-08, 4.29E-10),
'namelist' = 'jules_soil_biogeochem'
)
n_inorg_turnover = list(
'standard' = 1,
'min' = 0,
'max' = 10,
'namelist' = 'jules_soil_biogeochem'
)
sorp = list(
'standard' = 10,
'min' = 0,
'max' = 20,
'namelist' = 'jules_soil_biogeochem'
)
bio_hum_cn = list(
'standard' = 10,
'min' = 5,
'max' = 20,
'namelist' = 'jules_soil_biogeochem'
)
l_vg_soil = list(
'standard' = '.false.',
'min' = '.false.',
'max' = '.true.',
'namelist' = 'jules_soil'
)
gs_nvg_io = list(
'standard' = c(0.00000, 0.00000, 1.00000e-2, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6),
'min' = 0.5 * c(0.00000, 0.00000, 1.00000e-2, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6),
'max' = 2* c(0.00000, 0.00000, 1.00000e-2, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6),
'namelist' = 'jules_nvegparm'
)
paramlist = list(
'alpha_io' = alpha_io, # FMEC excluded, low sensitivity
'a_wl_io' = a_wl_io,
'bio_hum_cn' = bio_hum_cn,
'b_wl_io' = b_wl_io,
'dcatch_dlai_io' = dcatch_dlai_io,
'dqcrit_io' = dqcrit_io,
'dz0v_dh_io' = dz0v_dh_io,
'f0_io' = f0_io,
'fd_io' = fd_io,
'g_area_io' = g_area_io,
'g_root_io' = g_root_io, # FMEC excluded, constrained in literature
'g_wood_io' = g_wood_io,
'gs_nvg_io' = gs_nvg_io,
'hw_sw_io' = hw_sw_io,
'kaps_roth' = kaps_roth,
'knl_io' = knl_io,
'lai_max_io' = lai_max_io,
'lai_min_io' = lai_min_io,
'lma_io' = lma_io,
'l_vg_soil' = l_vg_soil,
'n_inorg_turnover' = n_inorg_turnover,
'nmass_io' = nmass_io,
'nr_io' = nr_io,
'retran_l_io' = retran_l_io,
'retran_r_io' = retran_r_io,
'r_grow_io' = r_grow_io,
'rootd_ft_io' = rootd_ft_io,
'sigl_io' = sigl_io,
'sorp' = sorp,
'tleaf_of_io' = tleaf_of_io,
'tlow_io' = tlow_io,
'tupp_io' = tupp_io
)
dougmcneall/julesR documentation built on Jan. 19, 2021, 9:34 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
# Default parameter perturbations for JULES
# 0.5 and 2 times
b_wl_io = list(
'standard' = rep(1.667, 13),
'min' = rep((0.6*1.667), 13), # make sure b_wl > 1
'max' = rep((2*1.667), 13),
'namelist' = 'jules_pftparm'
)
# 0.5 and 2 times
sigl_io = list(
'standard' = c(0.0375, 0.0375, 0.0375, 0.1, 0.1, 0.025, 0.025, 0.025, 0.05, 0.05, 0.05, 0.05, 0.05),
'min' = 0.5 * c(0.0375, 0.0375, 0.0375, 0.1, 0.1, 0.025, 0.025, 0.025, 0.05, 0.05, 0.05, 0.05, 0.05),
'max' = 2 * c(0.0375, 0.0375, 0.0375, 0.1, 0.1, 0.025, 0.025, 0.025, 0.05, 0.05, 0.05, 0.05, 0.05),
'namelist' = 'jules_pftparm'
)
# 0.5 and custom
lai_max_io = list(
'standard' = c(7,9,7,5,7,3,3,3,3,3,3,4,4),
'min' = 0.5 * c(7,9,7,5,7,3,3,3,3,3,3,4,4),
'max' = c(10,10,10,10,10,6,6,6,6,6,6,7,7),
'namelist' = 'jules_triffid'
)
# 1/3 and 3 times
lai_min_io = list(
'standard' = c(1,1,1,1,1,0.6,0.6,0.6,0.6,0.6,0.6,1,1),
'min' = 0.33 * c(1,1,1,1,1,0.6,0.6,0.6,0.6,0.6,0.6,1,1),
'max' = 3 * c(1,1,1,1,1,0.6,0.6,0.6,0.6,0.6,0.6,1,1),
'namelist' = 'jules_triffid'
)
# fix the zeros to -1,1 so that we get some variation in range
tlow_io = list(
'standard' = c(10,13,13,-10,0,10,10,10,13,13,13,10,0),
'min' = 0.9 * c(10,13,13,-10,-1,10,10,10,13,13,13,10,-1),
'max' = 1.1 * c(10,13,13,-10,1,10,10,10,13,13,13,10,1),
'namelist' = 'jules_pftparm'
)
# 0.5 and 2 times
g_area_io = list(
'standard' = c(0.011,0.007,0.014,0.01,0.025,0.125,0.125,0.125,0.06,0.06,0.06,0.06,0.1),
'min' = 0.5 * c(0.011,0.007,0.014,0.01,0.025,0.125,0.125,0.125,0.06,0.06,0.06,0.06,0.1),
'max' = 2 * c(0.011,0.007,0.014,0.01,0.025,0.125,0.125,0.125,0.06,0.06,0.06,0.06,0.1),
'namelist' = 'jules_triffid'
)
# 0.5 and 2 times
dqcrit_io = list(
'standard' = c(0.09,0.09,0.09,0.041,0.06,0.051,0.051,0.051,0.075,0.075,0.075,0.03,0.044),
'min' = 0.5 * c(0.09,0.09,0.09,0.041,0.06,0.051,0.051,0.051,0.075,0.075,0.075,0.03,0.044) ,
'max' = 2 * c(0.09,0.09,0.09,0.041,0.06,0.051,0.051,0.051,0.075,0.075,0.075,0.03,0.044),
'namelist' = 'jules_pftparm'
)
# 0.5 and 2 times
r_grow_io = list(
'standard' = rep(0.25,13),
'min' = 0.5 * rep(0.25,13),
'max' = 2 * rep(0.25,13) ,
'namelist' = 'jules_pftparm'
)
nmass_io = list(
'standard' = c(0.021 ,0.017, 0.0144, 0.0186, 0.0115, 0.024, 0.024, 0.024, 0.0113, 0.0113, 0.0113, 0.0218, 0.0136),
'min' = 0.5 * c(0.021 ,0.017, 0.0144, 0.0186, 0.0115, 0.024, 0.024, 0.024, 0.0113, 0.0113, 0.0113, 0.0218, 0.0136),
'max' = 2 * c(0.021 ,0.017, 0.0144, 0.0186, 0.0115, 0.024, 0.024, 0.024, 0.0113, 0.0113, 0.0113, 0.0218, 0.0136),
'namelist' = 'jules_pftparm'
)
lma_io = list(
'standard' = c(0.0823,0.1039, 0.1403,0.1006, 0.2263,0.0495, 0.0495, 0.0495, 0.137, 0.137, 0.137, 0.0709, 0.1515),
'min' = 0.5 * c(0.0823,0.1039, 0.1403,0.1006, 0.2263,0.0495, 0.0495, 0.0495, 0.137, 0.137, 0.137, 0.0709, 0.1515),
'max' = 2 * c(0.0823,0.1039, 0.1403,0.1006, 0.2263,0.0495, 0.0495, 0.0495, 0.137, 0.137, 0.137, 0.0709, 0.1515),
'namelist' = 'jules_pftparm'
)
nr_io = list(
'standard' = c(0.01726, 0.01726, 0.01726, 0.00784, 0.00784, 0.0162, 0.0162, 0.0162, 0.0084, 0.0084, 0.0084, 0.01726, 0.0172) ,
'min' = 0.5 * c(0.01726, 0.01726, 0.01726, 0.00784, 0.00784, 0.0162, 0.0162, 0.0162, 0.0084, 0.0084, 0.0084, 0.01726, 0.0172),
'max' = 2 * c(0.01726, 0.01726, 0.01726, 0.00784, 0.00784, 0.0162, 0.0162, 0.0162, 0.0084, 0.0084, 0.0084, 0.01726, 0.0172),
'namelist' = 'jules_pftparm'
)
tleaf_of_io = list(
'standard' = c(280, 278.15, 233.15, 278.15,233.15, 278.15, 278.15, 278.15, 278.15, 278.15, 278.15, 280, 233.15) ,
'min' = 0.9 * c(280, 278.15, 233.15, 278.15,233.15, 278.15, 278.15, 278.15, 278.15, 278.15, 278.15, 280, 233.15),
'max' = 1.1 * c(280, 278.15, 233.15, 278.15,233.15, 278.15, 278.15, 278.15, 278.15, 278.15, 278.15, 280, 233.15),
'namelist' = 'jules_pftparm'
)
dcatch_dlai_io = list(
'standard' = rep(0.05, 13) ,
'min' = 0.5 * rep(0.05, 13) ,
'max' = 2 * rep(0.05, 13) ,
'namelist' = 'jules_pftparm'
)
alpha_io = list(
'standard' = c(0.064, 0.064, 0.048, 0.08, 0.064, 0.048, 0.048, 0.048, 0.04, 0.04, 0.04, 0.064, 0.048),
'min' = 0.5 * c(0.064, 0.064, 0.048, 0.08, 0.064, 0.048, 0.048, 0.048, 0.04, 0.04, 0.04, 0.064, 0.048),
'max' = 2 * c(0.064, 0.064, 0.048, 0.08, 0.064, 0.048, 0.048, 0.048, 0.04, 0.04, 0.04, 0.064, 0.048),
'namelist' = 'jules_pftparm'
)
# These parameters taken from GA7
dz0v_dh_io_frac = c(0, 0.16) / 0.05
dz0v_dh_io = list(
'standard' = c(0.05, 0.05, 0.05, 0.05, 0.05, 0.1 , 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1),
'min' = rep(0, 13),
'max' = dz0v_dh_io_frac[2] * c(0.05, 0.05, 0.05, 0.05, 0.05, 0.1 , 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1),
'namelist' = 'jules_pftparm'
)
f0_io_frac = c(0.65, 0.972) / 0.875
f0_io = list(
'standard' = c(0.875, 0.875, 0.892, 0.875, 0.875, 0.931, 0.931, 0.931, 0.8, 0.8, 0.8, 0.875, 0.875),
'min' = f0_io_frac[1] * c(0.875, 0.875, 0.892, 0.875, 0.875, 0.931, 0.931, 0.931, 0.8, 0.8, 0.8, 0.875, 0.875),
'max' = f0_io_frac[2] * c(0.875, 0.875, 0.892, 0.875, 0.875, 0.931, 0.931, 0.931, 0.8, 0.8, 0.8, 0.875, 0.875),
'namelist' = 'jules_pftparm'
)
rootd_ft_io_frac = c(0, 8) /3
rootd_ft_io = list(
'standard' = c(2, 3, 2, 2, 1.8, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5),
'min' = rep(0, 13),
'max' = rootd_ft_io_frac[2] * c(2, 3, 2, 2, 1.8, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5),
'namelist' = 'jules_pftparm'
)
tupp_io_frac = c(25,41) / 36
tupp_io = list(
'standard' = c(43, 43, 43, 26, 32, 32, 32, 32, 45, 45, 45, 40, 36),
'min' = tupp_io_frac[1] * c(43, 43, 43, 26, 32, 32, 32, 32, 45, 45, 45, 40, 36),
'max' = tupp_io_frac[2] * c(43, 43, 43, 26, 32, 32, 32, 32, 45, 45, 45, 40, 36),
'namelist' = 'jules_pftparm'
)
# Andy Wiltshire's JULES Parameter choices
# Doug McNeall dougmcneall@gmail.com
hw_sw_io = list(
'standard' = rep(0.5, 13),
'min' = rep(0, 13),
'max' = rep(1,13),
'namelist' = 'jules_pftparm'
)
knl_io = list(
'standard' = rep(0.2, 13),
'min' = rep(0.1, 13),
'max' = rep(0.5,13),
'namelist' = 'jules_pftparm'
)
a_wl_io = list(
'standard' = c(0.78, 0.845, 0.78, 0.8, 0.65, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.13, 0.13),
'min' = 0.5 * c(0.78, 0.845, 0.78, 0.8, 0.65, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.13, 0.13),
'max' = 2* c(0.78, 0.845, 0.78, 0.8, 0.65, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.13, 0.13),
'namelist' = 'jules_pftparm'
)
fd_io = list(
'standard' = c(0.01, 0.01, 0.01, 0.015, 0.015, 0.019, 0.019, 0.019, 0.019, 0.019, 0.019, 0.015, 0.015),
'min' = 0.5 * c(0.01, 0.01, 0.01, 0.015, 0.015, 0.019, 0.019, 0.019, 0.019, 0.019, 0.019, 0.015, 0.015),
'max' = 2 * c(0.01, 0.01, 0.01, 0.015, 0.015, 0.019, 0.019, 0.019, 0.019, 0.019, 0.019, 0.015, 0.015),
'namelist' = 'jules_pftparm'
)
g_root_io = list(
'standard' = c(0.15, 0.25, 0.25, 0.15, 0.15, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.15, 0.15),
'min' = rep(0, 13),
'max' = rep(0.5, 13),
'namelist' = 'jules_triffid'
)
g_wood_io = list(
'standard' = c(0.01, 0.01, 0.01, 0.01, 0.01, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.05, 0.05),
'min' = rep(0,13),
'max' = c(0.05, 0.05, 0.05, 0.05, 0.05, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.1, 0.1),
'namelist' = 'jules_triffid'
)
retran_l_io = list(
'standard' = c(0.5, 0.5, 0.5, 0.77, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5),
'min' = rep(0,13),
'max' = rep(1,13),
'namelist' = 'jules_triffid'
)
retran_r_io = list(
'standard' = rep(0.2,13),
'min' = rep(0,13),
'max' = rep(1,13),
'namelist' = 'jules_triffid'
)
kaps_roth = list(
'standard' = c(2.15E-07, 6.43E-09, 1.41E-08, 4.29E-10),
'min' = 0.5 * c(2.15E-07, 6.43E-09, 1.41E-08, 4.29E-10),
'max' = 2 * c(2.15E-07, 6.43E-09, 1.41E-08, 4.29E-10),
'namelist' = 'jules_soil_biogeochem'
)
n_inorg_turnover = list(
'standard' = 1,
'min' = 0,
'max' = 10,
'namelist' = 'jules_soil_biogeochem'
)
sorp = list(
'standard' = 10,
'min' = 0,
'max' = 20,
'namelist' = 'jules_soil_biogeochem'
)
bio_hum_cn = list(
'standard' = 10,
'min' = 5,
'max' = 20,
'namelist' = 'jules_soil_biogeochem'
)
l_vg_soil = list(
'standard' = '.false.',
'min' = '.false.',
'max' = '.true.',
'namelist' = 'jules_soil'
)
gs_nvg_io = list(
'standard' = c(0.00000, 0.00000, 1.00000e-2, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6),
'min' = 0.5 * c(0.00000, 0.00000, 1.00000e-2, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6),
'max' = 2* c(0.00000, 0.00000, 1.00000e-2, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6, 1.00000e+6),
'namelist' = 'jules_nvegparm'
)
paramlist = list(
'alpha_io' = alpha_io, # FMEC excluded, low sensitivity
'a_wl_io' = a_wl_io,
'bio_hum_cn' = bio_hum_cn,
'b_wl_io' = b_wl_io,
'dcatch_dlai_io' = dcatch_dlai_io,
'dqcrit_io' = dqcrit_io,
'dz0v_dh_io' = dz0v_dh_io,
'f0_io' = f0_io,
'fd_io' = fd_io,
'g_area_io' = g_area_io,
'g_root_io' = g_root_io, # FMEC excluded, constrained in literature
'g_wood_io' = g_wood_io,
'gs_nvg_io' = gs_nvg_io,
'hw_sw_io' = hw_sw_io,
'kaps_roth' = kaps_roth,
'knl_io' = knl_io,
'lai_max_io' = lai_max_io,
'lai_min_io' = lai_min_io,
'lma_io' = lma_io,
'l_vg_soil' = l_vg_soil,
'n_inorg_turnover' = n_inorg_turnover,
'nmass_io' = nmass_io,
'nr_io' = nr_io,
'retran_l_io' = retran_l_io,
'retran_r_io' = retran_r_io,
'r_grow_io' = r_grow_io,
'rootd_ft_io' = rootd_ft_io,
'sigl_io' = sigl_io,
'sorp' = sorp,
'tleaf_of_io' = tleaf_of_io,
'tlow_io' = tlow_io,
'tupp_io' = tupp_io
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.