HCT116_r4: A 4 column sparse matrix for a Hi-C matrix.

HCT116_r4R Documentation

A 4 column sparse matrix for a Hi-C matrix.

Description

A matrix object with 4 columns and 54307 rows. Sample 4 of 7 included as example Hi-C data. This is replicate 4 of HCT-116 cell line at 100KB resolution from chHCT116_r22.

Usage

HCT116_r4

Format

An object of class data.frame with 54307 rows and 4 columns.

Value

A matrix

Source

Data from Rao 2017. See their website at http://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104888


dozmorovlab/multiHiCcompare documentation built on April 23, 2022, 9:56 a.m.