MD_composite: Plot a composite MD plot with the results of a comparison

In dozmorovlab/multiHiCcompare: Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available

Plot a composite MD plot with the results of a comparison

Description

Plot a composite MD plot with the results of a comparison

Usage

MD_composite(hicexp, plot.chr = NA, D.range = 1)

Arguments

hicexp	A hicexp object which has had a multiHiCcompare comparison step performed on it.
plot.chr	A specific chromosome or set of chromosome which you want to plot. This should be a numeric value, i.e. to plot chromosome 1 set plot.chr = 1, to plot chromosomes 1 and 5 set plot.chr = c(1, 5). Defaults to NA indicating that all chromosomes present in the hicexp will be plotted.
D.range	Allows for subsetting of the plot by Distance. Set to proportion of total distance that you want to be displayed. Value of 1 indicates that the entire distance range will be displayed. Defaults to 1.

Value

An MD plot

Examples

data("hicexp_diff")
MD_composite(hicexp_diff)

dozmorovlab/multiHiCcompare documentation built on April 23, 2022, 9:56 a.m.