.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/for_my_article.R
R/sfreemap.misc.R
R/sfreemap.plot.R
R/sfreemap.test.R
R/sfreemap.test.boxplot.R
README.md
benchmarks/README
benchmarks/boxplot/128_mcmc_ER_2015-12-26_16:41:54_boxplot/arguments.txt
benchmarks/boxplot/128_mcmc_ER_2015-12-26_16:41:54_boxplot/boxplot_emr_a.png
benchmarks/boxplot/128_mcmc_ER_2015-12-26_16:41:54_boxplot/boxplot_emr_b.png
benchmarks/boxplot/128_mcmc_ER_2015-12-26_16:41:54_boxplot/boxplot_emr_diff.png
benchmarks/boxplot/128_mcmc_ER_2015-12-26_16:41:54_boxplot/boxplot_lmt.png
benchmarks/boxplot/128_mcmc_ER_2015-12-26_16:41:54_boxplot/boxplot_lmt_diff.png
benchmarks/boxplot/128_mcmc_ER_2015-12-26_16:41:54_boxplot/simmap_25.txt
benchmarks/boxplot/128_mcmc_ER_2015-12-26_16:41:54_boxplot/tree.nexus
benchmarks/sfreemap.states.txt
benchmarks/sfreemap.taxa.txt
benchmarks/sfreemap.trees.txt
benchmarks/sfreemapc.states.omp.txt
benchmarks/sfreemapc.states.txt
benchmarks/sfreemapc.taxa.txt
benchmarks/sfreemapc.trees.mccores.txt
benchmarks/sfreemapc.trees.txt
benchmarks/simmap.states.txt
benchmarks/simmap.taxa.txt
benchmarks/simmap.trees.txt
benchmarks/test_increasing_parameters.r
man/create_trees.Rd
man/sfreemap.diff.Rd
man/sfreemap.test.boxplot.Rd
man/sfreemap.test.perf.Rd
man/simmap.mean.Rd
man/simulation.data.Rd
tests/128_mcmc_ER_2016-03-15_19:26:29_boxplot/arguments.txt
tests/128_mcmc_ER_2016-03-15_19:26:29_boxplot/boxplot_emr_a.png
tests/128_mcmc_ER_2016-03-15_19:26:29_boxplot/boxplot_emr_b.png
tests/128_mcmc_ER_2016-03-15_19:26:29_boxplot/boxplot_emr_diff.png
tests/128_mcmc_ER_2016-03-15_19:26:29_boxplot/boxplot_lmt.png
tests/128_mcmc_ER_2016-03-15_19:26:29_boxplot/boxplot_lmt_diff.png
tests/128_mcmc_ER_2016-03-15_19:26:29_boxplot/simmap_25.txt
tests/128_mcmc_ER_2016-03-15_19:26:29_boxplot/tree.nexus
tests/128_mcmc_ER_2016-04-04_23:12:09_boxplot/arguments.txt
tests/128_mcmc_ER_2016-04-04_23:12:09_boxplot/boxplot_emr_a.png
tests/128_mcmc_ER_2016-04-04_23:12:09_boxplot/boxplot_emr_b.png
tests/128_mcmc_ER_2016-04-04_23:12:09_boxplot/boxplot_emr_diff.png
tests/128_mcmc_ER_2016-04-04_23:12:09_boxplot/boxplot_lmt.png
tests/128_mcmc_ER_2016-04-04_23:12:09_boxplot/boxplot_lmt_diff.png
tests/128_mcmc_ER_2016-04-04_23:12:09_boxplot/simmap_25.txt
tests/128_mcmc_ER_2016-04-04_23:12:09_boxplot/tree.nexus
tests/128_mcmc_ER_2016-06-17_14:50:58_boxplot/arguments.txt
tests/128_mcmc_ER_2016-06-17_14:50:58_boxplot/boxplot_emr_a.png
tests/128_mcmc_ER_2016-06-17_14:50:58_boxplot/boxplot_emr_b.png
tests/128_mcmc_ER_2016-06-17_14:50:58_boxplot/boxplot_emr_diff.png
tests/128_mcmc_ER_2016-06-17_14:50:58_boxplot/boxplot_lmt.png
tests/128_mcmc_ER_2016-06-17_14:50:58_boxplot/boxplot_lmt_diff.png
tests/128_mcmc_ER_2016-06-17_14:50:58_boxplot/simmap_25.txt
tests/128_mcmc_ER_2016-06-17_14:50:58_boxplot/tree.nexus