README.md

In dpasqualin/sfreemap.tests: Tests for Sfreemap, the Simulation Free Stochastic Mapping

Info

This package is not useful in it's own. It was created to test and validate the package sfreemap.

Package Requirements for Production

You need to have R installed on your system. If you are using a debian/ubuntu based distribution, just type the following command in a terminal.

sudo apt-get install r-base-core

Package Requirements for Development

sudo apt-get install r-base-core texlive-full

Install

install.packages('devtools')
install_github('dpasqualin/sfreemap.tests')

If you have troubles installing the devtools package, try downloading sfreemap.tests and then building and installing it using the following commands:

git clone https://github.com/dpasqualin/sfreemap.tests.git
R CMD build sfreemap.tests && R CMD INSTALL sfreemap.tests

If you choose to install using the command above, the documentation will be available in the directory sfreemap.tests.Rcheck.

Some people might have problems with package Briostrings as well, which is a dependency of phangorn, which is a dependency of sfreemap. If you do, the official Biostrings website suggest the following commands to install it:

## try http:// if https:// URLs are not supported
source('https://bioconductor.org/biocLite.R')
biocLite('Biostrings')

dpasqualin/sfreemap.tests documentation built on May 15, 2019, 10:45 a.m.