sfreemap.test.boxplot: Simulation free stochastic character maps on a phylogenetic...

Description Usage Arguments Details Value Author(s) References See Also

View source: R/sfreemap.test.boxplot.R

Description

Description

Usage

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sfreemap.test.boxplot(species=100
                        , Q_simmap='mcmc'
                        , Q_sfreemap='empirical'
					    , trees=NULL
                       	, n_trees=1
					    , nsim=50
				        , n_tests=5
					    , sample_freq=100
					    , save_to_file=TRUE
	  				    , ...)

Arguments

species

The number of species in the simulated phylogeny

Q_mcmc

The transition rate matrix for simmap

Q_sfreemap

The transition rate matrix for sfreemap

trees

The trees to test on. Leave it NULL to test with random trees

n_trees

When trees=NULL you can choose how many random trees to generate

nsim

...

n_tests

number of tests to run, used to calculate the average

sample_freq

the frequency of samples taken form the markov chain

save_to_file

a boolean indicating whether to save the results into a file

...

more

Details

Details

Value

Returns

Author(s)

Diego Pasqualin [email protected]

References

References

See Also

See Also


dpasqualin/sfreemap.tests documentation built on May 13, 2017, 4:39 a.m.