enrich_go: Enrichment analysis using GO database of gene clusters from a...
In dputhier/scigenex: The scigenex package (Single-Cell Informative GENe Explorer)
enrich_go R Documentation
Enrichment analysis using GO database of gene clusters from a ClusterSet object
Description
This function performs enrichment analysis of all gene clusters from a ClusterSet object
and store the results in the cluster_annotations slot.
Usage
enrich_go(object, species = "Hsapiens", ontology = "all")
Arguments
object
an object of class ClusterSet.
species
a character string indicating the species name,
as a concatenation of the first letter of the name (uppercase) and the family name (lowercase),
e.g human -> Hsapiens, mouse -> Mmusculus
ontology
a character string indicating the ontology to use for the enrichment analysis. One of "BP", "MF", and "CC" ontology, or "ALL".
Value
A ClusterSet object
dputhier/scigenex documentation built on Jan. 29, 2024, 3:40 p.m.
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| enrich_go | R Documentation |
Enrichment analysis using GO database of gene clusters from a ClusterSet object
Description
This function performs enrichment analysis of all gene clusters from a ClusterSet object and store the results in the cluster_annotations slot.
Usage
enrich_go(object, species = "Hsapiens", ontology = "all")
Arguments
object |
an object of class |
species |
a character string indicating the species name, as a concatenation of the first letter of the name (uppercase) and the family name (lowercase), e.g human -> Hsapiens, mouse -> Mmusculus |
ontology |
a character string indicating the ontology to use for the enrichment analysis. One of "BP", "MF", and "CC" ontology, or "ALL". |
Value
A ClusterSet object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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