filter_cluster_sd: Filter out gene clusters with small standard deviation.

In dputhier/scigenex: The scigenex package (Single-Cell Informative GENe Explorer)

Filter out gene clusters with small standard deviation.

Description

Filter out gene clusters with small standard deviation.

Usage

filter_cluster_sd(object = NULL, min_sd = 0.2)

Arguments

object	A ClusterSet object.
min_sd	An integer indicating the minimum standard deviation for a clusters to be kept.

Value

A ClusterSet object where clusters not passing the filter have been removed.

Examples

load_example_dataset("7871581/files/pbmc3k_medium_clusters")
df <- cluster_stats(pbmc3k_medium_clusters)  
plot_cluster_stats(df)
plot_cluster_stats(df, highlight=df$sd_total > 0.3) 
pbmc3k_medium_clusters_sub <- filter_cluster_sd(pbmc3k_medium_clusters, min_sd=0.3)
plot_cluster_stats(cluster_stats(pbmc3k_medium_clusters_sub))

dputhier/scigenex documentation built on Jan. 29, 2024, 3:40 p.m.