Man pages for drake69/semseeker
Stochastic Epigenetic Mutations SEM Seeker
| analyze_population | Calculate stochastic epi mutations from a methylation dataset... |
| analyze_single_sample | analyze_single_sample |
| annotate_bed | create an annotated file for each marker, figure, area and... |
| apply_stat_model | Title |
| association_analysis | Association analysis of SEMseeker's results |
| build_data_set_from_geo | build_data_set_from_geo |
| compute_qr_beta_boot_p | Title |
| compute_quantreg_beta_boot_np | Title |
| create_heatmap | create_heatmap load the multiple bed resulting from analysis... |
| data_preparation | Title |
| deltar_single_sample | delta_single_sample |
| delta_single_sample | delta_single_sample |
| dir_check_and_create | dir_check_and_create |
| dump_sample_as_bed_file | given data and colnames dump as bed file |
| glm_model | Title |
| init_env | init ssEnvonment |
| manhattan_plot_per_area | Title |
| mutations_get | mutations_get |
| pivot_to_long_format | Get the pivot in long format instead of wide format |
| pp_tot | PROBES_CHR_CHR |
| PROBES | PROBES_CHR_CHR |
| PROBES_CHR_CHR | PROBES_CHR_CHR |
| quantreg_model | Title |
| quantreg_summary | Quantile regression result value, confidence interval and... |
| range_beta_values | calculate the range of beta values to define the outlier |
| read_multiple_bed | read multiple bed with annotated data as per input parameter |
| semseeker | Calculate stochastic epi mutations from a methylation dataset... |
| sort_by_chr_and_start | sort the dataframe using CHR and START sorting column first... |
| test_match_order | Title |
| test_model | Title |
