manhattan_plot_per_area: Title

In drake69/semseeker: Stochastic Epigenetic Mutations SEM Seeker

Title

Description

Title

Usage

manhattan_plot_per_area(
  marker,
  figure,
  group,
  subgroup,
  family,
  adjust_method,
  phenotype,
  only_significant_areas = FALSE
)

Arguments

marker	investigated marker eg. MUTATIONS, DELTAR, DELTAQ
figure	HYPO, HYPER
group	genomic area (eg. GENE, ISLAND, DMR)
subgroup	sub genomic area (TSS1550), depending on the genomic area
family	fullname of the family used for the association analysis
adjust_method	colnames of the pvalue adjusted to use
phenotype	variable to select from the sample_sheet to use for coloring point
only_significant_areas	TRUE if filter for pvalue < 0.05

drake69/semseeker documentation built on Sept. 17, 2023, 12:22 a.m.