server <- function(input, output, session) {
library(easyreporting)
library(ggplot2)
source(system.file("script/plotFunctions.R",
package="easyreporting"))
traceAndPlotVolcano <- function(threshold, er, comment)
{
mkdCodeChunkTitledCommented(object=er, title="Volcano Plot",
level=1,
codeMsg=paste0(" degs <- readRDS(\"degs.RDS\")\nVolcanoPlot(degs=degs, threshold=",
threshold,")"),
commentMsg=comment,
sourceFilesList=system.file("script/plotFunctions.R", package="easyreporting"))
degs <- readRDS("degs.RDS")
vplot <- VolcanoPlot(degs=degs, threshold=threshold)
return(vplot)
}
###########
vr <- easyreporting(filenamePath=file.path(getwd(), "report"),
title="volcano_report",
author=c("Dario Righelli"))
observeEvent(input$do, {
output$plot1 <-
renderPlot({
traceAndPlotVolcano(threshold=input$slider_pval,
er=vr,
comment=input$comment_text)
})
})
observeEvent(input$do2, {
compile(vr)
browseURL("report.html")
})
}
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