API for drisso/EDASeq
Exploratory Data Analysis and Normalization for RNA-Seq

Global functions
.autoDetectGeneIdType Source code
.availableOrgPkgs Source code
.gcLoess Source code
.gcQuant Source code
.getOrgIdType Source code
.isAvailable Source code
.org2pkg Source code
.supportedOrganisms Source code
EDASeq Man page
EDASeq-package Man page
MDPlot Man page
MDPlot,SeqExpressionSet,numeric-method Man page
MDPlot,matrix,numeric-method Man page
MDPlot-methods Man page
SeqExpressionSet-class Man page
barplot,BamFile-method Man page
barplot,BamFileList-method Man page
barplot,FastqFileList-method Man page
barplot-methods Man page
betweenLaneNormalization Man page
betweenLaneNormalization,SeqExpressionSet-method Man page
betweenLaneNormalization,matrix-method Man page
betweenLaneNormalization-methods Man page
biasBoxplot Man page
biasBoxplot,numeric,numeric,numeric-method Man page
biasBoxplot,numeric,numeric-method Man page
biasBoxplot-methods Man page
biasPlot Man page
biasPlot,SeqExpressionSet,character-method Man page
biasPlot,matrix,numeric-method Man page
biasPlot-methods Man page
boxplot,FastqQuality-method Man page
boxplot,SeqExpressionSet-method Man page
boxplot-methods Man page
counts,SeqExpressionSet-method Man page
counts<-,SeqExpressionSet-method Man page
exprs,SeqExpressionSet-method Man page
exprs<-,SeqExpressionSet,ANY-method Man page
getGeneLengthAndGCContent Man page Source code
initialize,SeqExpressionSet-method Man page
meanVarPlot Man page
meanVarPlot,SeqExpressionSet-method Man page
meanVarPlot-methods Man page
newSeqExpressionSet Man page Source code
normCounts Man page
normCounts,SeqExpressionSet-method Man page
normCounts<- Man page
normCounts<-,SeqExpressionSet,ANY-method Man page
normCounts<-,SeqExpressionSet-method Man page
offst Man page
offst,SeqExpressionSet-method Man page
offst<- Man page
offst<-,SeqExpressionSet,ANY-method Man page
offst<-,SeqExpressionSet-method Man page
plot,BamFileList,FastqFileList-method Man page
plot-methods Man page
plotNtFrequency Man page
plotNtFrequency,BamFile-method Man page
plotNtFrequency,ShortRead-method Man page
plotNtFrequency-methods Man page
plotPCA Man page
plotPCA,SeqExpressionSet-method Man page
plotPCA,matrix-method Man page
plotPCA-methods Man page
plotQuality Man page
plotQuality,BamFile-method Man page
plotQuality,BamFileList-method Man page
plotQuality,FastqFileList-method Man page
plotQuality-methods Man page
plotRLE Man page
plotRLE,SeqExpressionSet-method Man page
plotRLE,matrix-method Man page
plotRLE-methods Man page
withinLaneNormalization Man page
withinLaneNormalization,SeqExpressionSet,character-method Man page
withinLaneNormalization,matrix,numeric-method Man page
withinLaneNormalization-methods Man page
yeastGC Man page
yeastLength Man page
drisso/EDASeq documentation built on May 23, 2020, 10:10 p.m.