Files in drjingma/netgsa
Network-Based Gene Set Analysis
.DS_Store
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/NetGSA.R
R/NetGSAq.R
R/RcppExports.R
R/adj2inf.R
R/approxVarEst.R
R/bic.netEst.undir.R
R/call.netgsa.R
R/data.R
R/glmnet.soft.R
R/graphlaplacian.R
R/he_method.R
R/matTr.R
R/netEst.dir.R
R/netEst.undir.R
R/netgsa-internal.R
R/netgsa.ftest.R
R/netgsa.onesample.R
R/netgsa.ttest.R
R/newton.R
R/normalizeAdj.R
R/obtainEdgeList.R
R/plot.NetGSA.R
R/prepareAdjMat.R
R/preparePathways.R
R/profile.newton.se.R
R/zeroInd.R
README.md
data/breastcancer2012.rda
inst/.DS_Store
inst/doc/edgelist.txt
inst/doc/nonedgelist.txt
inst/extdata/edgelist.txt
man/.DS_Store
man/NetGSA.Rd
man/NetGSAq.Rd
man/addUserEdges.Rd
man/bic.netEst.undir.Rd
man/breastcancer2012.Rd
man/checkUserEdges.Rd
man/convertEdgeListToZeroOne.Rd
man/edgelist.Rd
man/formatPathways.Rd
man/group.Rd
man/netEst.dir.Rd
man/netEst.undir.Rd
man/netEstClusts.Rd
man/netgsa-package.Rd
man/nonedgelist.Rd
man/obtainClusters.Rd
man/obtainEdgeList.Rd
man/pathways.Rd
man/pathways_mat.Rd
man/plot.NetGSA.Rd
man/prepareAdjMat.Rd
man/preparePathways.Rd
man/stackDatabases.Rd
man/x.Rd
man/zoomPathway.Rd
netgsa.Rproj
src/.DS_Store
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/rcpp_lin_alg.cpp
vignettes/.DS_Store
vignettes/bibli.bib
vignettes/cyto_erbb.png
vignettes/cyto_legend.png
vignettes/cyto_pathway_network_default.png
vignettes/edgelist.txt
vignettes/igraph_cyto_pathway_network_default.png
vignettes/igraph_erbb.png
vignettes/igraph_legend.png
vignettes/igraph_pathway_network_default.png
vignettes/netgsa.Rmd
vignettes/netgsa.html
vignettes/nonedgelist.txt
