#' Data matrix p by n
'x'
#' The vector of class indicators
'group'
#' A list of KEGG pathways
'pathways'
#' A data frame of edges, each row corresponding to one edge
'edgelist'
#' A data frame of nonedges, each row corresponding to one negative edge
'nonedgelist'
#' Matrix with pathway indicators
'pathways_mat'
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