gg_pairwise_orthologs_line: Plot number of pairwise orthologs for multiple species...
In drostlab/metablastr: Perform Massive Local BLAST Searches

View source: R/gg_pairwise_orthologs_line.R

gg_pairwise_orthologs_line

R Documentation

Plot number of pairwise orthologs for multiple species comparisons

Description

Visualizes pairwise orthologs for multiple species comparisons as line graph.

Usage

gg_pairwise_orthologs_line(
  ortho_summary,
  xlab = "Subject Species",
  ylab = "Number of reciprocal best hit orthologs",
  title = "",
  vline = NULL,
  ymax = NULL
)

Arguments

`ortho_summary`	a `data.frame` storing the `subject_species` in the first column and the number of orthologs named `n_orthologs` in the second column.
`xlab`	label of x-axis.
`ylab`	label of y-axis.
`title`	plot title.
`vline`	plot a line characterizing the core set. Default is `vline = NULL` meaning that no vline is drawn.
`ymax`	max value of y-axis. Default is `ymax = NULL` meaning that the largest value within the dataset will be used to determine y-max.