gg_species_promotor_dist_blast_tbl: Plot pairwise promotor sequence distance distributions of...

In drostlab/metablastr: Perform Massive Local BLAST Searches

Plot pairwise promotor sequence distance distributions of orthologous genes

Description

This function enables users to plot pairwise promotor sequence distance distributions of orthologous genes.

Usage

gg_species_promotor_dist_blast_tbl(
  blast_tbl,
  type,
  order,
  xlab = "",
  ylab = "",
  title = ""
)

Arguments

blast_tbl	a blast_tbl.
type	type of sustitution rate quantification that shall be visualized on the y-axis. Options are: type = "promotor_dist" type = "promotor_aln_score" type = "promotor_indel_blocks" type = "promotor_indels"
order	a character vector specifying the order of the species using their scientific names (which have to match the species names stored in the subject_species column of the input blast_tbl).
xlab	label of x-axis.
ylab	label of y-axis.
title	title label.

Author(s)

Hajk-Georg Drost

drostlab/metablastr documentation built on Sept. 14, 2023, 10:43 a.m.