oasis_refine: OASISAD refine probability function

In dty0606/oasisad: 'OASISAD' an Improved Automated White Matter Hyper-intensity Classficiation Tool

Description

Refine voxel's probability of being white matter hypeintensity by neighbor information. Neighbor

Usage

oasis_refine(
  prob_map,
  neighbor = FALSE,
  seg = NULL,
  wm = NULL,
  wm_label = NULL,
  re_value = NULL,
  indx = NULL,
  indx3d = NULL
)

Arguments

prob_map	A dataframe includes a voxel's probability of being white matter and its nearest neighor voxels' vetorized indice.
neighbor	A boolean whether using neighor function to correct probability map
seg	File path of segmentation mask segmentation tool such as FSL Please set non-brain tissue in seg to 0
wm	File path of white matter pve from segmentation tool such as FSL
wm_label	A value indicates white matter label in input seg_voxel argument. If null, it is 3, by FSL.
re_value	A value used in neighbor calculation function to suppress probability of being WMH
indx	Voxels' vectorized indices
indx3d	Voxels' 3D indices

Value

Refined probability map

dty0606/oasisad documentation built on March 8, 2020, 11:18 p.m.