Kersplat_estimation | R Documentation |
This function is used to estimate useful parameters from a real dataset by
using kersplatEstimate
function in Splatter package.
Kersplat_estimation(ref_data, verbose = FALSE, seed)
ref_data |
A count matrix. Each row represents a gene and each column represents a cell. |
verbose |
Logical. |
seed |
An integer of a random seed. |
A list contains the estimated parameters and the results of execution detection.
Zappia L, Phipson B, Oshlack A. Splatter: simulation of single-cell RNA sequencing data. Genome biology, 2017, 18(1): 1-15. https://doi.org/10.1186/s13059-017-1305-0
Bioconductor URL: https://bioconductor.org/packages/release/bioc/html/splatter.html
Github URL: https://github.com/Oshlack/splatter
## Not run:
ref_data <- simmethods::data
# Estimate parameters
estimate_result <- Kersplat_estimation(ref_data = ref_data,
verbose = TRUE,
seed = 111)
estimate_result <- estimate_result[["estimate_result"]]
## Check the class
class(estimate_result) == "KersplatParams"
## End(Not run)
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