Man pages for dwassarman/cellpanelr
Analyze Data from Cell Line Panels
| add_ids | Append new column containing DepMap IDs |
| annotations_plot | Plot data based on given cell line feature |
| bh_correction | Benjamini-Hochberg correction for p-value significance |
| cor_expression | Calculate cell line response with gene expression |
| cor_mutations | Correlate cell line response with gene mutations |
| data_annotations | Cell line annotations |
| data_expression | Gene expression data |
| data_mutations | Cell line mutations |
| data_nutlin | Nutlin-3 data set |
| exp_plot_selected | Generate scatterplot expression vs. response, faceted by... |
| exp_tooltip | Render a tooltip when user hovers mouse over plot |
| get_selected_genes | Get list of selected genes based on row selections from table |
| helpButton | Help button |
| load_file | Upload a file |
| mut_plot_selected | Generate boxplot genotype vs. response, faceted by selected... |
| mut_vol_tip | Tooltip for the mutation volcano plot |
| n_exp_matched | Number of cell lines present in expression data set |
| n_mut_matched | Number of cell lines present in mutation data set |
| pipe | Pipe operator |
| prepare_data | Prepare uploaded data for analysis modules |
| remove_multi_cell | Remove IDs that map to more than one cell line |
| remove_multi_id | Remove IDs that map to the same cell line |
| run_app | Run the Shiny Application |
| volcano_plot | Generate volcano plot effect vs. p value |
