add_ids: Append new column containing DepMap IDs

In dwassarman/cellpanelr: Analyze Data from Cell Line Panels

Append new column containing DepMap IDs

Description

Matches cell line names from the given column to unique DepMap IDs. Matching is performed using only alpha-numeric characters from the provided names. NA will be produced when the cell line cannot be found in the data_annotations data set or when there is non-unique cell <-> ID mapping.

Usage

add_ids(data, cell)

Arguments

data	A tibble.
cell	Name of column containing cell line names

Value

Provided data tibble with a new depmap_id' column

Examples

data <- tibble::tibble(
  CellLine = c("MCF7", "293T", "K562"),
  viability = c(0.96, 0.58, 0.70)
)

add_ids(data, cell = "CellLine")

dwassarman/cellpanelr documentation built on Jan. 3, 2023, 8:27 a.m.