data_expression: Gene expression data

In dwassarman/cellpanelr: Analyze Data from Cell Line Panels

Gene expression data

Description

Function that returns gene expression data for 19,177 genes and 1,393 cell lines. First call will download the data from DropBox and cache it in memory for subsequent calls.

Usage

data_expression()

Format

A tibble with 26,713561 rows and 3 columns.

depmap_id

Unique identifier of each cell line. Formatted ACH-######.

gene

Hugo gene symbol

rna_expression

RNA expression level expressed as log2(TPM + 1) where TPM is transcripts per million.

Source

DepMap (Broad Institute), release 22Q1: https://depmap.org/portal/

dwassarman/cellpanelr documentation built on Jan. 3, 2023, 8:27 a.m.