TODO.md

In dwoll/DVHmetrics: Analyze Dose-Volume Histograms and Check Constraints

TODO

• Vignette: The radiation effect (E) or cell kill can be defined as follows: E = n(alphad + beta*d^2), divide both sides by alpha
• getMetric(dvh_m, metric="D5cc") works even though volumeUnit is NA
• invalid option "error" -> use paste() first inside stop()
• x <- readDVH("c:/Users/Daniel/Downloads/DVH poumon volume absolute.txt", type="HiArt", volume_from_dvh=TRUE, hiart=list(doseRx=50)) Fehler in mapply(FUN = f, ..., SIMPLIFY = FALSE) : # list(list(doseRx=50)) ? Eingaben mit Länge 0 können nicht mit Eingaben anderer Länge gemischt werden
• readDVH(): use tryCatch() to diagnose problems with input files containing umlauts / accents that are not in UTF-8 encoding / use con <- file(..., encoding="UTF8"), then readLines(con, encoding="")

Medium term

• check that expensive calculations (e.g., conversion to differential DVH) are done only once, and then stored
• conformity index CI?
• allow checkConstraint(x, "DNTCP < 50%") instead of 0.5Gy
• getMetric(), checkConstraint(), readDVH() -> multicore support
• readDVH() -> if x is a directory, read all files in it
• readDVH() -> if x is a zip file, read all files in it
• read files exported from iPlan, BrainLab

Long term

• shiny app: better way to save old data instead of temp-file
• getDMEAN() smooth.spline() -> tol must be strictly positive
• getDMEAN() bandwidth choice for locpoly() when dpill() fails
• getDMEAN() adaptive binning grid size for locpoly() with small bandwidth
• merge DVH files from the same patient ID
• add Eclipse fields: Comment, Exported by, Description, Plan Status, Approval Status, Dose Coverage, Sampling Coverage, Equivalent Sphere Diameter, Conformity Index, Gradient Measure
• convert RadOnc objects to DVHmetrics objects and back
• showConstraint() -> draw constraint arrows as custom geoms (ggplot2 2.1.0 https://github.com/hadley/ggplot2/blob/master/vignettes/extending-ggplot2.Rmd)
• harmonize structures by reading equivalence file, possibly with regex

Build

Sys.setenv(R_GSCMD="C:\Program Files\gs\gs9.26\bin\gswin32c.exe")

• "c:\program files\r\r-4.1.2\bin\x64\Rcmd.exe" INSTALL --build DVHmetrics_0.3.8.tar.gz
• "c:\program files\r\r-4.1.2\bin\x64\Rcmd.exe" build DVHmetrics --resave-data --compact-vignettes="both"
• "c:\program files\r\r-4.1.2\bin\x64\Rcmd.exe" check DVHmetrics_0.3.9.tar.gz --as-cran

• install.packages("d:/daniel_work/workspace/DVHmetrics_0.3.9.tar.gz", repos=NULL, type="source")

• "c:\program files\r\r-devel\bin\x64\Rcmd.exe" INSTALL --build DVHmetrics_0.3.9.tar.gz

• "c:\program files\r\r-devel\bin\x64\Rcmd.exe" build DVHmetrics --resave-data --compact-vignettes="both"
• "c:\program files\r\r-devel\bin\x64\Rcmd.exe" check DVHmetrics_0.3.9.tar.gz --as-cran
• install.packages("h:/workspace/DVHmetrics_0.3.9.tar.gz", repos=NULL, type="source")

dwoll/DVHmetrics documentation built on March 3, 2024, 9:28 a.m.