A: Allelic Diversity
In dyerlab/gstudio: Tools Related to the Spatial Analysis of Genetic Marker Data
A R Documentation
Allelic Diversity
Description
This function returns the number of unique, non-NA alleles, in a sample.
Usage
A(x, min_freq = 0, loci = NULL, ...)
Arguments
x
A set of locus objects
min_freq
The minimum frequency of allele to consider (default=0)
loci
A list of loci to use (if a data.frame), if not given
then all will be considered.
...
Ignored
Value
The number of alleles that have min_freq frequency.
Examples
loci <- c( locus(1:2), locus(c(1,1)), locus(c(2,2)), locus(2:3) )
A(loci)
A(loci, min_freq=0.13)
dyerlab/gstudio documentation built on Jan. 17, 2025, 11:17 a.m.
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| A | R Documentation |
Allelic Diversity
Description
This function returns the number of unique, non-NA alleles, in a sample.
Usage
A(x, min_freq = 0, loci = NULL, ...)
Arguments
x |
A set of |
min_freq |
The minimum frequency of allele to consider (default=0) |
loci |
A list of loci to use (if a |
... |
Ignored |
Value
The number of alleles that have min_freq frequency.
Examples
loci <- c( locus(1:2), locus(c(1,1)), locus(c(2,2)), locus(2:3) )
A(loci)
A(loci, min_freq=0.13)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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