Ae: Effective Allelic Diversity

In dyerlab/gstudio: Tools Related to the Spatial Analysis of Genetic Marker Data

Effective Allelic Diversity

Description

This function returns the effective number of alleles in a sample.

Usage

Ae(x, loci = NULL, ...)

Arguments

x	A set of locus objects either as a vector or within a data.frame.
loci	A list of loci to use if this is a data.frame (default is NULL). If missing, all loci are used.
...	Ignored

Value

The effective number of alleles either as a numeric value or as a data.frame if multiple loci are passed.

Examples

locus <- c( locus(1:2), locus(c(1,1)), locus(c(2,2)), locus(2:3) )
Ae(locus)
locus2 <- c( locus(1:2), locus(c(1,1)), locus(c(2,2)), locus(2:3) )
df <- data.frame( locus, locus2 )
Ae(df)

dyerlab/gstudio documentation built on Jan. 17, 2025, 11:17 a.m.