Run topslam
1 2 3 | topslam(expression, start_cell_id, n_components = 2, n_neighbors = 10,
linear_dims = 0, max_iters = 200, dimreds = c("t-SNE", "PCA",
"Spectral", "Isomap", "ICA"), num_cores = 1)
|
expression |
the normalised expression data |
start_cell_id |
the names of starting cells |
n_components |
the number of components |
n_neighbors |
the number of neighbors |
linear_dims |
? |
max_iters |
the number of iterations to optimize over |
dimreds |
the dimensionality reductions to use |
num_cores |
the number of cores |
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