topslam: Run topslam
In dynverse/topslam: Wrapper for topslam
Description
Run topslam
Usage
1
2
3
topslam(expression, start_cell_id, n_components = 2, n_neighbors = 10,
linear_dims = 0, max_iters = 200, dimreds = c("t-SNE", "PCA",
"Spectral", "Isomap", "ICA"), num_cores = 1)
Arguments
expression
the normalised expression data
start_cell_id
the names of starting cells
n_components
the number of components
n_neighbors
the number of neighbors
linear_dims
?
max_iters
the number of iterations to optimize over
dimreds
the dimensionality reductions to use
num_cores
the number of cores
dynverse/topslam documentation built on May 28, 2019, 7:55 p.m.
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Description
Run topslam
Usage
1 2 3 | topslam(expression, start_cell_id, n_components = 2, n_neighbors = 10,
linear_dims = 0, max_iters = 200, dimreds = c("t-SNE", "PCA",
"Spectral", "Isomap", "ICA"), num_cores = 1)
|
Arguments
expression |
the normalised expression data |
start_cell_id |
the names of starting cells |
n_components |
the number of components |
n_neighbors |
the number of neighbors |
linear_dims |
? |
max_iters |
the number of iterations to optimize over |
dimreds |
the dimensionality reductions to use |
num_cores |
the number of cores |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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