calc_ERs_delta: Calculates delta for sets of ERs
In dzhang32/ODER: Optimising the Definition of Expressed Regions
Description
Usage
Arguments
Value
Description
calc_ERs_delta calculates the delta/difference between a set of ERs
and another given set of GRanges that are the optimal
Usage
1
calc_ERs_delta(ERs_MCCs_MRGs, opt_gr, delta_func = .delta)
Arguments
ERs_MCCs_MRGs
Sets of ERs across various MCCs/MRGs - output of
gen_ERs.
opt_gr
GRanges object that contains the regions that ideally, you want
to the ER definitions to match
delta_func
Function that calculates the delta between ERs and
opt_gr. Takes as input a set of ERs from ERs_MCCs_MRGs and
opt_gr. Then outputs a tibble/dataframe containing the summarised
delta scores for that set of one set of ERs.
Value
tibble/dataframe containing summarised delta values. One row per set
of ERs.
dzhang32/ODER documentation built on April 23, 2021, 11:21 p.m.
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Description Usage Arguments Value
Description
calc_ERs_delta calculates the delta/difference between a set of ERs
and another given set of GRanges that are the optimal
Usage
1 | calc_ERs_delta(ERs_MCCs_MRGs, opt_gr, delta_func = .delta)
|
Arguments
ERs_MCCs_MRGs |
Sets of ERs across various MCCs/MRGs - output of
|
opt_gr |
GRanges object that contains the regions that ideally, you want to the ER definitions to match |
delta_func |
Function that calculates the delta between ERs and
|
Value
tibble/dataframe containing summarised delta values. One row per set of ERs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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