get_no_overlap_exons: Optain set of non-overlapping exons
In dzhang32/ODER: Optimising the Definition of Expressed Regions
Description
Usage
Arguments
Value
Description
get_no_overlap_exons uses as input a gtf to optain set of
non-overlapping exons. These can be used in gen_ERs as the
opt_gr to optimise ER definitions.
Usage
1
get_no_overlap_exons(gtf, ucsc_chr, ignore.strand)
Arguments
gtf
Either a string if path to a .gtf file or a pre-imported gtf using
import.
ucsc_chr
logical scalar, determining whether to add "chr" prefix to the
seqnames of non-overlapping exons and change "chrMT" -> "chrM". Note, if
set to TRUE and seqnames already have "chr", it will not add another.
ignore.strand
logical value for input into
findOverlaps.
Value
GRanges object containing non-overlapping exons.
dzhang32/ODER documentation built on April 23, 2021, 11:21 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
get_no_overlap_exons uses as input a gtf to optain set of
non-overlapping exons. These can be used in gen_ERs as the
opt_gr to optimise ER definitions.
Usage
1 | get_no_overlap_exons(gtf, ucsc_chr, ignore.strand)
|
Arguments
gtf |
Either a string if path to a .gtf file or a pre-imported gtf using
|
ucsc_chr |
logical scalar, determining whether to add "chr" prefix to the seqnames of non-overlapping exons and change "chrMT" -> "chrM". Note, if set to TRUE and seqnames already have "chr", it will not add another. |
ignore.strand |
logical value for input into
|
Value
GRanges object containing non-overlapping exons.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.