callHits: Call hits based on p-value and resampled data

In eachanjohnson/concensusGLM: concensusGLM

Description

Call hits based on p-values and resampled data.

Usage

callHits(x, ...)

## Default S3 method:
callHits(x, ...)

## S3 method for class 'concensusWorkflow'
callHits(x, resampled_x = NULL, ...)

## S3 method for class 'concensusDataSet'
callHits(x, method = "resampling",
  false_discovery_rate. = 0.05, prevalence = 0.01, ...)

Arguments

x	concensusWorkflow or concensusDataSet.
...	Other arguments.
method	Character. Only "resampling" is supported.
prevalence	Numeric. The expected or known prevalence. Used to construct a model dataset from resampled data.
false_disovery_rate.	Numeric. The desired false discovery rate. Default 0.05.

Details

Resampled data are used to calaulate FDRs at a sliding p-value cutoff.

Value

concensusWorkflow or concensusDataSet.

eachanjohnson/concensusGLM documentation built on June 26, 2019, 2:26 a.m.