analyze: Run concensusGLM analysis

In eachanjohnson/concensusGLM: concensusGLM

Description

Do all caluclations on count data to calculate batch effects, dispersions, and final effect sizes and p-values.

Usage

analyze(x, ...)

## Default S3 method:
analyze(x, ...)

## S3 method for class 'concensusDataSet'
analyze(x, grouping = c("compound",
  "concentration", "strain"), conditions = c("compound", "concentration"),
  scattering = "strain", ...)

## S3 method for class 'concensusWorkflow'
analyze(x, grouping = c("compound",
  "concentration", "strain"), conditions = c("compound", "concentration"),
  scattering = "strain", locality = "local", parallel = FALSE, ...)

Arguments

x	concensusWorkflow or concensusDataSet.
...	Other arguments passed to execute.
grouping	Character vector. Combination of data columns to identify unique observations.
conditions	Character vector. Combination of data columns to idenitfy unique conditions.
scattering	Character. Column identifying analytically independent chunks for parallelization.

Value

concensusWorkflow or concensusDataSet with a new mean_variance_relationship and dispersion attribute.

eachanjohnson/concensusGLM documentation built on June 26, 2019, 2:26 a.m.