clean: Clean up ConcensusGLM data

In eachanjohnson/concensusGLM: concensusGLM

Description

Clean up ConcensusGLM data. Removes strains with total count across data below threshold and plates with total counts below 1000 x threshold

Usage

clean(x, ...)

## Default S3 method:
clean(x, ...)

## S3 method for class 'data.frame'
clean(x, threshold = 100, plate_fraction = 0.6, ...)

Arguments

x	data.frame to clean.
...	Other arguments.
threshold	Numeric. Strains below this total count threshold will be discarded. Plates below 1000 x threshold will be discarded.

Value

Cleaned data.frame

eachanjohnson/concensusGLM documentation built on June 26, 2019, 2:26 a.m.