getModifProteinCoordinates: Get modification coordinates on protein
In eahrne/SafeQuant: A Toolbox for the Analysis of Proteomics Data
Description
Usage
Arguments
Details
Value
Note
References
Examples
View source: R/IdentificationAnalysis.R
Description
Get modification coordinates on protein
Usage
1
getModifProteinCoordinates(modifAnnot, peptideSeq, proteinSeq, format = 1)
Arguments
modifAnnot
modifcation as annotated by progenesis. E.g. '[15] Phospho (ST)|[30] Phospho (ST)'
peptideSeq
peptide sequence
proteinSeq
protein sequence
format
c(1,2) 1. progenesis 2. scaffold
Details
NA
Value
vector of protein coordinates (mmodification residue number)
Note
No note
References
NA
Examples
1
print("No examples")
eahrne/SafeQuant documentation built on April 8, 2021, 10:10 a.m.
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Description Usage Arguments Details Value Note References Examples
View source: R/IdentificationAnalysis.R
Description
Get modification coordinates on protein
Usage
1 | getModifProteinCoordinates(modifAnnot, peptideSeq, proteinSeq, format = 1)
|
Arguments
modifAnnot |
modifcation as annotated by progenesis. E.g. '[15] Phospho (ST)|[30] Phospho (ST)' |
peptideSeq |
peptide sequence |
proteinSeq |
protein sequence |
format |
c(1,2) 1. progenesis 2. scaffold |
Details
NA
Value
vector of protein coordinates (mmodification residue number)
Note
No note
References
NA
Examples
1 | print("No examples")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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