getAllEBayes: Perform statistical test (mderated t-test), comparing all...

In eahrne/SafeQuant: A Toolbox for the Analysis of Proteomics Data

Description

Perform statistical test (mderated t-test), comparing all case to control

Usage

getAllEBayes(eset = eset, adjust = F, log = T, method = "pairwise",
  adjustFilter = matrix(F, nrow = nrow(eset), ncol =
  length(levels(pData(eset)$condition)) - 1))

Arguments

eset	ExpressionSet
adjust	TRUE/FALSE adjust for multiple testing using Benjamini & Hochberg (1995) method
log	T/F log-transform expression values
method	c("all","pairwise")
adjustFilter	matrix T/F do not adjust for multiple testing

Details

No details

Value

data.frame of pvalues per condition comparison

Note

No note

References

Empirical Bayes method, Smyth (2004), http://www.ncbi.nlm.nih.gov/pubmed/16646809

See Also

eBayes

Examples

print("No examples")

eahrne/SafeQuant documentation built on April 8, 2021, 10:10 a.m.