boolmat: boolmat

In ebecht/hypergate: Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry

boolmat

Description

Convert an expression matrix and a gating strategy to a boolean matrix (whether each event is gated out by each channel)

Usage

boolmat(gate, xp)

Arguments

gate	A return from hypergate
xp	Expression matrix as in the hypergate callxp=Samusik_01_subset$xp_src[,Samusik_01_subset$regular_channels]

Examples

data(Samusik_01_subset)
xp=Samusik_01_subset$xp_src
gate_vector=Samusik_01_subset$labels
hg=hypergate(xp=xp,gate_vector=gate_vector,level=23,delta_add=0.01)
head(boolmat(hg,xp))

ebecht/hypergate documentation built on Feb. 4, 2024, 3:29 p.m.