subset_matrix_hg: subset_matrix_hg

In ebecht/hypergate: Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry

subset_matrix_hg

Description

Returns a boolean vector whose TRUE elements correspond to events inside the hyperrectangle

Usage

subset_matrix_hg(gate, xp)

Arguments

gate	a return from hypergate
xp	Expression matrix used for gate

Examples

data(Samusik_01_subset)
xp=Samusik_01_subset$xp_src[,Samusik_01_subset$regular_channels]
gate_vector=Samusik_01_subset$labels
hg=hypergate(xp=xp,gate_vector=gate_vector,level=23,delta_add=0.01)
gating_state=subset_matrix_hg(hg,xp)
gating_state=ifelse(gating_state,"Gated in","Gated out")
target=ifelse(gate_vector==23,"Target events","Others")
table(gating_state,target)

ebecht/hypergate documentation built on Feb. 4, 2024, 3:29 p.m.