plot_gating_strategy: plot_gating_strategy

In ebecht/hypergate: Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry

plot_gating_strategy

Description

Plot a hypergate return

Usage

plot_gating_strategy(
  gate,
  xp,
  gate_vector,
  level,
  cex = 0.5,
  highlight = "black",
  path = "./",
  ...
)

Arguments

gate	A hypergate object (produced by hypergate())
xp	The expression matrix from which the 'gate' parameter originates
gate_vector	Categorical data from which the 'gate' parameter originates
level	Level of gate_vector identifying the population of interest
cex	size of dots
highlight	color of the positive population when plotting
path	Where png files will be produced
...	passed to png

Examples

data(Samusik_01_subset)
xp=Samusik_01_subset$xp_src[,Samusik_01_subset$regular_channels]
gate_vector=Samusik_01_subset$labels
hg=hypergate(xp=xp,gate_vector=gate_vector,level=23,delta_add=0.01)
par(mfrow=c(1,ceiling(length(hg$active_channels)/2)))
plot_gating_strategy(gate=hg,xp=xp,gate_vector=gate_vector,level=23,highlight="red")

ebecht/hypergate documentation built on Feb. 4, 2024, 3:29 p.m.