internal: Internal TaxCI-functions

In eberlejonas/TaxCI: Calculate the Consistency Index and the Retention Index for taxonomic data

Description

Dummies: Create dummy variables.

transform_user_table

is.wholenumber

Usage

Dummies(tree)

transform_user_table(data, x)

is.wholenumber(x, tol = .Machine$double.eps^0.5)

Arguments

tree	A phylogenetic tree in phylo-format.
x	transform_user_table: A metadata table. row.names() must correspond to data[,1]. an R-object
data	A data.frame with two columns: (i) specimen id, (ii) grouping by integers.
tol	Tolerance.

Details

Dummies: Creates 0-1-dummy variables for the taxonomic level as labeled at tip of a tree. The outgroup is ignored.

transform_user_table: Makes cluster object for internal use from a user-provided data.frame and the metadata.

Author(s)

Jonas Eberle

eberlejonas/TaxCI documentation built on July 20, 2021, 9:46 a.m.