makeTable: Summary tables for TaxCI-analyses

In eberlejonas/TaxCI: Calculate the Consistency Index and the Retention Index for taxonomic data

Description

Create a summary table for a taxonomic consistency analysis from tci and the BCCluster.

Usage

makeTable(plotParamTCI.result, plotParamBCC.result, sort = "score", file = NA)

Arguments

plotParamTCI.result	The output of plotParamTCI.
plotParamBCC.result	The output of plotParamBCC.
sort	By which column should the table be sorted? Possible choices are: \"tci\", \"cl.het\", \"sp.split\", \"low.abun\", \"other.homog\", or \"score\". Defaults to \"score\".
file	Optional. If specified, a tab-delimited text file is created instead of a data.frame.

Details

No output is created if no problematic specimens were detected.

Value

A data.frame with relevent specimens as rownames or a tab-delimited text file.

Author(s)

Jonas Eberle

See Also

See TaxCI for example.

Related: tci, BCCluster, plotParamTCI, plotParamBCC

eberlejonas/TaxCI documentation built on July 20, 2021, 9:46 a.m.