Files in ebimodeling/biocro
BioCro Crop and Agroecosystem Simulator

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
ChangeLog
DESCRIPTION
LICENSE
NAMESPACE
R/BioCro.R R/CanA.R R/Century.R R/CheckLeapYear.R R/CropGro.R R/MCMCBioGro.R R/MaizeGro.R R/OpBioGro.R R/OpEC4photo.R R/OpMaizeGro.R R/Opc3photo.R R/Opc4photo.R R/RUEmod.R R/RUEmodMY.R R/Rmiscanmod.R R/RssBioGro.R R/RssMaizeGro.R R/SatWatVap.R R/SoilEvapo.R R/biocro-package.R R/c3CanA.R R/c3photo.R R/c4photo.R R/caneGro.R R/constrOpBioGro.R R/cropcent.R R/eC4photo.R R/idbp.R R/idbpm.R R/lightME.R R/plotAC.R R/plotAQ.R R/showSoilType.R R/soilML.R R/soyGro.R R/sunML.R R/valid_dbp.R R/waterStress.R R/weach.R R/weach.data.table.R R/weach365.R R/weach366.R R/weachNEW.R R/weach_imn.R R/willowCent.R R/willowGro.R README.md
TODO
build.sh
configure
configure.win
data/EngWea94i.rda
data/EngWea94rf.rda
data/LayET.rda
data/WD1979.rda
data/aci.rda
data/annualDB.rda
data/annualDB2.rda
data/aq.rda
data/boo14.200.rda
data/calibration.RData
data/cmi04.rda
data/cmi05.rda
data/cmi0506.rda
data/cmi06.rda
data/cmiWet.rda
data/doy124.rda
data/forweach.test.RData
data/obsBea.rda
data/obsBeaC.rda
data/obsNaid.rda
data/parms.rda
data/saof_validation.RData
data/simA100.rda
data/simAssim.rda
data/simDat2.rda
data/urbana2008to2012.rda
data/warm.RData
data/weather04.rda
data/weather05.rda
data/weather06.rda
data/willow_obsvpred.RData
documentation/Doxyfile
documentation/Doxyfile_win
documentation/README
documentation/equations.pdf
documentation/equations.tex
documentation/publications/bernacchi2003itr.pdf documentation/publications/long1991mrp.pdf documentation/publications/migeuz2009smp.pdf documentation/publications/wang2015pbm.pdf
inst/c3photo.Rnw
inst/data_driven_model_development.Rmd inst/doc/c3Intro.pdf
inst/extdata/CM_SC.txt
inst/extdata/Photo.csv
inst/extdata/SimUSwillow.r
inst/extdata/aci2010.csv
inst/extdata/calibration.csv
inst/extdata/getclimatedata.R
inst/extdata/met2010.csv
inst/extdata/met2011.csv
inst/extdata/poplarphotosynthesis.csv
inst/extdata/salix.RData
inst/extdata/salixmet.R
inst/extdata/v060.RData
inst/extdata/v070.RData
inst/extdata/v075.RData
inst/extdata/v081.RData
inst/extdata/v092.RData
inst/extdata/validation.R
inst/extdata/validation_sites.csv
inst/extdata/weather/42.792--76.125/1987-1987/weather.csv
inst/extdata/weather/44.08--93.51/2003-2003/weather.csv
inst/extdata/weather/45.083--74.333/1998-1998/weather.csv
inst/extdata/weather/45.083--74.333/2001-2001/weather.csv
inst/extdata/weather/48.733-8.933/2002-2002/weather.csv
inst/extdata/weather/49.08-12.15/1983-1983/weather.csv
inst/extdata/weather/49.15-15/1996-1996/weather.csv
inst/extdata/weather/51.47-22.07/2003-2003/weather.csv
inst/extdata/weather/53.73-18.89/2000-2000/weather.csv
inst/extdata/weather/54.43-16.4/2003-2003/weather.csv
inst/extdata/weather/56.93-12.35/1982-1982/weather.csv
inst/extdata/weather/56.93-12.35/2001-2001/weather.csv
inst/extdata/weather/59.483-16.067/1983-1983/weather.csv
inst/extdata/weather/59.483-16.067/2001-2001/weather.csv
inst/extdata/weather/59.617-16.667/1990-1990/weather.csv
inst/extdata/weather/59.617-16.667/2001-2001/weather.csv
inst/extdata/weather/aliceholt.RData
inst/extdata/weather/balbbiocro.Rdata
inst/extdata/weather/balbbiocro.csv
inst/extdata/weather/balbirnie.RData
inst/extdata/weather/balbweather2.Rdata
inst/extdata/weather/lianwrst.RData
inst/extdata/weather/llanwrst.RData
inst/extdata/weather/loug.RData
inst/extdata/weather/loughgall.RData
inst/extdata/weather/loytbiocro.csv
inst/extdata/weather/loyton.RData
inst/extdata/weather/loytweather2.Rdata
inst/extdata/weather/scotland.RData
inst/extdata/weather/talybont.RData
inst/extdata/weather/teanahuig.RData
inst/extdata/weather/thorpe.RData
inst/extdata/weather/trefbiocro.csv
inst/extdata/weather/trefeinon.RData
inst/extdata/weather/trefweather2.Rdata
inst/extdata/weather/trumbiocro.csv
inst/extdata/weather/trumpington.RData
inst/extdata/weather/trumweather2.Rdata
inst/extdata/weather/ukweather.R
inst/extdata/weather/willowarlingtonwi.RData
inst/extdata/weather/willowbirchhillssk.RData
inst/extdata/weather/willowboisbriandqc.RData
inst/extdata/weather/willowburlingtonvt.RData
inst/extdata/weather/willowquennstownmd.RData
inst/extdata/weather/willowtullyny.RData
inst/extdata/weather/willowtullyny2005.RData
inst/extdata/weather/willowuk1997.RData
inst/extdata/weather/willowwasecamn.RData
inst/extdata/willowGrotestv0.912.R
inst/extdata/willowaq2011.csv
inst/extdata/willowdata.csv
inst/extdata/willowgrowclimate.RData
inst/extdata/willowhourlyclimate.RData
inst/original_tests/MCMCc4photo-output.r
inst/original_tests/TOPLNseasonal.c
inst/original_tests/c4photoR.r inst/original_tests/campbell.r inst/original_tests/debug.r inst/original_tests/mcmc-out.r inst/original_tests/rootDist.r inst/original_tests/swv.r inst/original_tests/tCanA.r inst/original_tests/tCentury.r inst/original_tests/tMCMCBioGro.r inst/original_tests/tMCMCc4photo.r inst/original_tests/tOpBioGro.r inst/original_tests/tOpc3photo.r inst/original_tests/tOpwillowGro.r inst/original_tests/tballBerry.r inst/original_tests/tc3photo.r inst/original_tests/tc4photo.r inst/original_tests/tc4photoR.r inst/original_tests/tc4photo_RH.r inst/original_tests/tdebug.r inst/original_tests/tplots.r inst/original_tests/tsoilML.r inst/original_tests/ws-fun.r inst/salix_benchmarks.Rmd inst/sugarcane_validation.Rmd inst/test_sensitivity.Rmd inst/testcropcent.R inst/willow_manuscript.Rmd
man/.gitkeep
src/AuxBioCro.c
src/AuxBioCro.h
src/AuxCropGro.c
src/AuxMaizeGro.c
src/AuxMaizeGro.h
src/AuxcaneGro.c
src/AuxcaneGro.h
src/AuxwillowGro.c
src/AuxwillowGro.h
src/BioCro.c
src/BioCro.h
src/CanA.h
src/CanAC.c
src/Century.c
src/Century.h
src/Filling_BioCro_SoilStructure.c
src/Functions.c
src/Functions.h
src/RWrapper.c
src/R_CanA.c
src/R_MisGro.c
src/R_SABioGro.c
src/R_SABioGro.h
src/R_c3CanA.c
src/R_c3photo.c
src/R_c4photo.c
src/R_caneGro.c
src/R_cntry.c
src/R_maizeGro.c
src/R_maizeGro.h
src/R_willowGro.c
src/Structures.h
src/assignManagement.c
src/c3CanAC.c
src/c3EvapoTrans.c
src/c3EvapoTrans.h
src/c3canopy.h
src/c3photo.c
src/c3photo.h
src/c4photo.c
src/c4photo.h
src/century/Assigncropcent.c
src/century/Auxcropcent.c
src/century/CalculateBiogeochem.c
src/century/CropGro_c.c
src/century/R_CropGro.c
src/century/R_cropcent.c
src/century/R_willowCent.c
src/century/printcropcentoutput.c
src/crocent.h
src/cropcent/Calculate_Soil_Layer_Temperature.c
src/cropcent/Copy_CropCent_To_DayCent_Structure.c
src/cropcent/Copy_SoilWater_BioCro_To_CropCent.c
src/cropcent/createNULLc3tree.c
src/cropcent/function_prototype.h
src/dailywillow.c
src/dailywillow.h
src/eC4photo.c
src/leaf_nitrogen_limitation_functions.c
src/management.h
src/ray_tracer/BBox.cpp
src/ray_tracer/BBox.h
src/ray_tracer/CanAC_3D.c
src/ray_tracer/CanA_3D_Structure.h
src/ray_tracer/Climate.cpp
src/ray_tracer/Climate.h
src/ray_tracer/Compound.cpp
src/ray_tracer/Compound.h
src/ray_tracer/Constants.h
src/ray_tracer/Grid.cpp
src/ray_tracer/Grid.h
src/ray_tracer/LeafOptics.cpp
src/ray_tracer/LeafOptics.h
src/ray_tracer/Maths.cpp
src/ray_tracer/Maths.h
src/ray_tracer/Normal.cpp
src/ray_tracer/Normal.h
src/ray_tracer/Point3D.cpp
src/ray_tracer/Point3D.h
src/ray_tracer/Ray.cpp
src/ray_tracer/Ray.h
src/ray_tracer/Triangle.cpp
src/ray_tracer/Triangle.h
src/ray_tracer/Vector3D.cpp
src/ray_tracer/Vector3D.h
src/ray_tracer/getIdirIdiff.c
src/ray_tracer/microclimate_for_3Dcanopy.c
src/ray_tracer/runFastTracer.cpp
src/ray_tracer/runFastTracer.h
src/ray_tracer/test_mainC.c
src/ray_tracer/update_3Dcanopy_structure.c
src/soil_chemical_flux/denitrify.c
src/soil_chemical_flux/diffusiv.c
src/soil_chemical_flux/getsoilprop.c
src/soil_chemical_flux/leachdly.c
src/soil_chemical_flux/methane.c
src/soil_chemical_flux/n2o_model.h
src/soil_chemical_flux/nitrify.c
src/soil_chemical_flux/nox_pulse.c
src/soil_chemical_flux/pi_funcs.c
src/soil_chemical_flux/tgmodel.c
src/soil_chemical_flux/wfps.c
src/soilwater.h
src/soyGro.c
src/soyGro.h
src/swconst.h
tests/testthat.R tests/testthat/test.BioGrofunctions.R tests/testthat/test.c3CanA.R tests/testthat/test.c3photo.R tests/testthat/test.weach.data.table.R tests/testthat/test.willowGro-sensitivity.R
vignettes/biocro-manual-knitr.Rnw
ebimodeling/biocro documentation built on Sept. 29, 2017, 2:40 a.m.