createTransomicEdges: Create Trans-Omic edges between layers of the network.

In ecell/transomics2cytoscape: A tool set for 3D Trans-Omic network visualization with Cytoscape

Create Trans-Omic edges between layers of the network.

Description

Create Trans-Omic edges between layers of the network

Usage

createTransomicEdges(suid, transomicEdges)

Arguments

suid

A SUID of Cytoscape network

transomicEdges

Path of a TSV file with the 7 columns (layer index of the source node, the column name for which you want to find the attribute value of the source node, the attribute value of the source node should have, layer index of a target node name or KEGG object ID that the source node should have, layer index of the target node, the column name for which you want to find the attribute value of the target node, the attribute value of the target node should have, name or KEGG object ID that the target node should have, interaction type).

Value

A SUID of the 3D network.

Author(s)

Kozo Nishida

Examples

## Not run: 
layer1to2 <- system.file("extdata/usecase1", "k2e.tsv",
    package = "transomics2cytoscape")
suid <- createTransomicEdges(suid, layer1to2)

## End(Not run)

ecell/transomics2cytoscape documentation built on Aug. 25, 2023, 5:38 a.m.